barSeed - Barley Seed Development Database

Probe CUST_10540_PI390587928

Source Contig U35_27238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10540_PI390587928	Hv_44K_v2	AGCCCTACATTGGATAATTGGCGACGAAGTCAATTATGCATAGTTATTGTGTGTGTCAAA	422	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.676	1.533	1.029	0.845	0.396	0.472
Raw	219.080	303.644	182.254	230.549	39.080	50.368

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41421.6	3570	8e-25	2897 - 2956	100	60 / 60	plus
JLOC1	JLOC1_41421.5	3380	8e-25	2707 - 2766	100	60 / 60	plus
JLOC1	JLOC1_41421.4	3547	8e-25	2874 - 2933	100	60 / 60	plus
JLOC1	JLOC1_41421.3	3436	8e-25	2763 - 2822	100	60 / 60	plus
JLOC1	JLOC1_41421.2	3491	8e-25	2818 - 2877	100	60 / 60	plus
JLOC1	JLOC1_41421.1	3507	8e-25	2834 - 2893	100	60 / 60	plus
Harvest35	U35_27238	496	3e-25	423 - 482	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_27238 496 Hv_44K_v2
TCTATATGTCGGAAACCGCGAAAGGTGATTCCAAGCTCCTCGCTTCCAAGGCATCTTGTG
CCTCTCACATGCTTGGGCCCGGATTCCCATATGTCAAAGCAGCTAAGAGCTATCTTTCCA
AGCAAGAAGCTATGGATGAATCCAGATTCTTGTCCAGGAACATCGAAAATTCTGTCAAGT
TATTACAAAGTTTGGAGAAACTAACTTGATGGCTCCGTTTAGTTTTCTCTTTTCTTTTTC
GTAGGGTAGTTTATGTTGTTGTATAATTTTGACATGATATGAGGTTAGTTTTTGTGAGCG
GGAGATCTACAGCGGTGCATCCCAATATTTTGTGTAGTTGGCGCTGGTGAGACATGAGAA
TCAACAGCGGTGTGTCCCAATATATAGCATATTTGGCATTGGTCAAACACTTACGTTGTC
CTAGCCCTACATTGGATAATTGGCGACGAAGTCAATTATGCATAGTTATTGTGTGTGTCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_27238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None