barSeed - Barley Seed Development Database

Probe CUST_10537_PI390587928

Source Contig U35_39212

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10537_PI390587928	Hv_44K_v2	AATTAGTGGCTCGATTATCATATGTACGGCTGATATGTGGTTCCCCTGAATATTAAAAAA	43	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.871	1.187	1.721	1.489	0.751	0.464
Raw	172.618	366.924	476.777	625.579	114.136	77.088

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC35242	533	3e-25	44 - 103	100	60 / 60	minus	ABC35242
Harvest35	U35_39212	533	3e-25	44 - 103	100	60 / 60	minus

Contig Sequence (533 bp)

>U35_39212 533 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGAGAGTAACAAAACTTATTTTGATTTTTTTTAATATTCAGGG
GAACCACATATCAGCCGTACATATGATAATCGAGCCACTAATTAGTCCCTAAAACTAATC
TCGTACAACCCAGCCTCACGGTTGTACATACACACACCTACACAACACATGGCCATGGTC
ATGGCCGTGGCCACCAGCAGCAGCAGCAATAGACGGCAGCCAAGAGCAGCGGCAATGCAG
CTTGCAGGAGCAGACAACAGTGGCAACAGCGACAGGAGCAAGCGACACTACGGGTGCAGG
GAAGATGTGGGGCACGGGCTCGCGCAGAATGGAGGGAGAGGAGAGGGTGGCCGGGGCCGG
TGTGCTCACCACCGAGCAGGGGTGGCAGAGGCTCGAGGAGGCTCAGGCGGGGCGGTGGCA
TGGTGGTACGCCGGTGGTGCAGCGCCACCGGGGAGGACATGTGTCGACGTGTGGCACTGG
CCGATGCGGCGGCGCAGGTTGGGCAGTGGGGGCGGNGGTGCCTGTCCCGTGCG

Homology of Contig U35_39212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None