barSeed - Barley Seed Development Database

Probe CUST_10528_PI390587928

Source Contig U35_15263

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10528_PI390587928	Hv_44K_v2	TGTTATGTGGATTGTGGTTTCATCCGAACATCTTTGTCCTACAAATGACATGTCGTGAAC	1100	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.913	1.636	1.059	0.655	0.228	0.107
Raw	124.864	162.470	90.976	90.981	11.293	4.707

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69016.1	1079	2e-24	171 - 230	100	60 / 60	minus	ABC03170
JLOC1	JLOC1_45712.1	861	8e-25	739 - 798	100	60 / 60	plus
Harvest21	ABC03170	1163	3e-25	1101 - 1160	100	60 / 60	plus	ABC03170
Harvest35	U35_15263	1163	3e-25	1101 - 1160	100	60 / 60	plus

Contig Sequence (1163 bp)

>U35_15263 1163 Hv_44K_v2
GCCCACCCACCCCCCTCTCCTCTCCGGCGCGCCTCCCCCCACCGGCGAATCCGCAACCGA
ATCCAATCCCAGGATCCGCGTGCGGCGGCGGGCGGGCGGGCGGGCGGCGGCGGAGGAGGT
AGGAACACATGGCGCACCGGGTGGACAACGAGTACGACTACCTCTTCAAGATCGTGCTCA
TCGGCGACTCCGGCGTCGGCAAGTCCAACATCCTCTCCCGCTTCACCCGCAACGAGTTCT
GCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCACCCTCCAGATAGAAG
GCAAGACCATTAAAGCTCAGATATGGGATACTGCTGGCCAAGAGAGGTACCGTGCAATCA
CAAGTGCTTACTACAGGGGAGCTGTGGGAGCACTTTTGGTGTATGACATAACAAAGAAGC
AAACTTTTGAAAACATCAATAGGTGGCTTCGTGAGCTCCGTGACCATGCTGACTCCAACA
TCGTTATAATGATGGTTGGAAACAAGTCTGATCTCAACCACCTGAGGTCAGTCCCAGAGG
AAGATGGCCAGGCATTAGCAGAGAAGGAAGGGCTATCCTTCCTCGAGACCTCAGCACTGG
AAGCCTTGAATGTCGAGAAGGCGTTTCAGACTATCCTTTCCGACATCCATCAGATCATAA
GCAAGAAGGCGCTTGCTGCCCAGGAGGCTGCTGGCAGTGGACCTCCGACTCAAGGAACCA
CCATCAATGTTGCCGATTCATCCGGTAACACAAAGAAAGGGTGCTGCTCTACCTAGGGTG
TGAACAGAGAAGTGGTGCTTCTGCAAAAGGATGCTCATATGGATCTCGCGGCGCTCTAGG
TGTTAGTTGGGTCCCTATGACTCCTTTTGGCCTGTAATTCTGGTGAGGTTGTATTAAAGT
TCATACTGCTAGAAAGAAATTATCCTTGGTAGATACCGTGTGTAGTTGCAAATTTTTGGT
AGAGACCATTGTTTGTCAGTCAGACTTACTACAGTTTCAGAGCAATATCATGTTTCCTTT
CAGGTATATGTTTGTCCTATGACATTTGATGCCCCGAATTACAGGAGCACGAACAATGCA
ATATCTATATCTCTTTTACTTGTTATGTGGATTGTGGTTTCATCCGAACATCTTTGTCCT
ACAAATGACATGTCGTGAACATT

Homology of Contig U35_15263 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60870.1	216	3e-143	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g03490.1	216	4e-146
Arabidopsis v10	AT1G07410.1	214	3e-128	\| Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b \| RAB GTPase homolog A2B \| chr1:2276270-2277154 FORWARD LENGTH=214