barSeed - Barley Seed Development Database

Probe CUST_10517_PI390587928

Source Contig U35_27240

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10517_PI390587928	Hv_44K_v2	AATTTCGAAGGGTACATGAAGCTCGTCGAGATGGCGCGCGATGCCAAGCTCAAGGTGCAG	262	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4517.2	1212	2e-24	292 - 351	100	60 / 60	plus	None
MLOC	MLOC_4517.3	1212	2e-24	292 - 351	100	60 / 60	plus	None
MLOC	MLOC_4517.1	1745	2e-24	387 - 446	100	60 / 60	plus	ABC08246
JLOC1	JLOC1_2818.2	1701	8e-25	306 - 365	100	60 / 60	plus
JLOC1	JLOC1_2818.1	1738	8e-25	343 - 402	100	60 / 60	plus
JLOC1	JLOC1_2819.1	630	8e-25	229 - 288	100	60 / 60	minus
Harvest21	ABC34744	611	3e-25	263 - 322	100	60 / 60	plus
Harvest35	U35_27240	611	3e-25	263 - 322	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_27240 611 Hv_44K_v2
GCAACACTTTTGCGCCTTGCTTGCGTGCGAGGCGATGGCCGAGAGCGCCGCCGCGGCCGG
GCAATCATCCTCGGTGAGGAAGTCTGGGGTGCCGGTGTTCGTGATGATGCCGCTGGACAC
GGTGAAGACGTGCTGCGGGAGCGGTCTGAACCACCGGAGGACCATGGCGCGGGATCTGGC
GGCTCTCAAGAGCTCGGGCGTGGAGGGAGTCATGGTGGACGTGTGGTGGGGCGTCGTGGA
GGGCGAGGAGTCGGGGCTGTACAATTTCGAAGGGTACATGAAGCTCGTCGAGATGGCGCG
CGATGCCAAGCTCAAGGTGCAGGCCGTCATGTCCTTCCACCAGTGCGGCGGCAACGTCGG
TGACACCGTCAACATCCCGCTGCCGCGGTGGGTGGTGGAGGATATGGACAAAGACCAGGA
CCTCGCCTACACTGACCAATGCGGACGCCGCAGCTACGAGTTCGTGTCGCTCGGCTGCGA
CGACGTGCCCGTCCTCGACGGACGCACGCCCATCCGGTGCTACACCGACTTCATGCGCGC
CTTCCGCGACCACTTGGCCGGCTTCCTCGGGGACACCATCGTCGAAGTCCAAGTCGGCAT
GGGCCCCGGCG

Homology of Contig U35_27240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32810.1	536	1e-78	protein\|beta-amylase, putative, expressed
Brachypodium v1_2	Bradi3g28210.1	535	6e-79
Arabidopsis v10	AT3G23920.1	575	1e-63	\| Symbols: BAM1, BMY7, TR-BAMY \| beta-amylase 1 \| chr3:8641722-8644199 FORWARD LENGTH=575