- Probe CUST_10516_PI390587928
- Source Contig U35_27241
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10516_PI390587928 | Hv_44K_v2 | AACCTGTTGATTTTAGACGATATATAAGATGTAATCGCAGTCATTGTGCTCTTACTGTAC | 444 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.090 | 2.155 | 1.241 | 0.835 | 0.336 | 0.384 |
| Raw | 887.087 | 1453.482 | 720.898 | 759.647 | 109.117 | 135.009 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7704.2 | 2786 | 2e-24 | 2685 - 2744 | 100 | 60 / 60 | plus | ABC24609 |
| MLOC | MLOC_7704.1 | 2794 | 2e-24 | 2719 - 2778 | 100 | 60 / 60 | plus | ABC24609 |
| JLOC1 | JLOC1_5091.1 | 2681 | 8e-25 | 2606 - 2665 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24609 | 546 | 3e-25 | 445 - 504 | 100 | 60 / 60 | plus | ABC24609 |
| Harvest35 | U35_27241 | 546 | 3e-25 | 445 - 504 | 100 | 60 / 60 | plus |
Contig Sequence (546 bp)
>U35_27241 546 Hv_44K_v2 CCTGAGAGTGACCTTGAGGAGGATGCAGAAGAAGGACCCGCTGATGAAAACCTGCAGGCC AGTGCACAACATGATGATGCCGTCCAAAATTCTGAATCCGACGGAGAAGAGGATGAAGTA TTAATACACAGGAAGGGAGCTAATGCAAACCAAATTGTCCAAGATTCTGAATCCGATGGA GAAGACGAGGAAGTATTAGCATGCAGGAAGAGAGCTAAGACAAACCAGATGGTCCAAGAT TCTGAGTCTGAAGGAGAAGAGGAGCAAATGTTAGCACGGAGGAAGAGAGCCAAGAGAAAC CAAATCGTCCAAGATTCTGAATCTGATGATGAAGATGCTGAAGGCGAGTGAATTTTTCTG TAGGCAGCAATCAGAAAGCGTTAGTCTGCTCCTAGGAAATATAGAGCAATACTCGTAGAT AGTTTTGAACTGTTTCTGTTGGTTAACCTGTTGATTTTAGACGATATATAAGATGTAATC GCAGTCATTGTGCTCTTACTGTACTTCATTCAGNGCCAAGAACTTCCTTTATTGAAAAAA AAAAAA
Homology of Contig U35_27241 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |