- Probe CUST_10512_PI390587928
- Source Contig U35_41536
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10512_PI390587928 | Hv_44K_v2 | ATCGCCTTCGCGGAGCAGCAGCGCACCATGGAGAATGACCCGGAGAAGAAGAAGTACCCG | 449 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.021 | 4.174 | 1.391 | 0.804 | 0.344 | 0.482 |
| Raw | 169.754 | 158.780 | 45.972 | 43.733 | 5.721 | 9.820 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_20487.4 | 728 | 3e-22 | 162 - 220 | 98 | 58 / 59 | plus | ABC01208 ABC39390 ABC40179 ABC43415 |
| MLOC | MLOC_20487.3 | 1495 | 3e-22 | 767 - 825 | 98 | 58 / 59 | plus | ABC01208 ABC39390 ABC40179 ABC43415 |
| MLOC | MLOC_20487.2 | 870 | 3e-22 | 574 - 632 | 98 | 58 / 59 | plus | ABC01208 ABC40179 |
| MLOC | MLOC_20487.1 | 1250 | 3e-22 | 821 - 879 | 98 | 58 / 59 | plus | ABC01208 ABC39390 ABC40179 ABC43415 |
| JLOC1 | JLOC1_14200.1 | 1551 | 1e-22 | 589 - 647 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC01208 | 1088 | 5e-23 | 521 - 579 | 98 | 58 / 59 | plus | ABC01208 |
| Harvest21 | ABC40179 | 474 | 2e-21 | 235 - 293 | 97 | 57 / 59 | minus | ABC40179 |
| Harvest35 | U35_41536 | 655 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14128 | 1110 | 5e-23 | 531 - 589 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_43480 | 474 | 2e-21 | 235 - 293 | 97 | 57 / 59 | minus |
Contig Sequence (655 bp)
>U35_41536 655 Hv_44K_v2 GGGACTTCGGGTTCGACCCCCTGGCGAGGAGCCGTCCAGATGGGCGGGGCGGGGCTGGCC GGGGAACCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTAGGCGCAGAACGG CAGTCCGGAGCGGCCGGACCGGGACGAAGGCGCCAGCAGGCTCGGCACGCCCACGGCGCT GCAGCTCCTCGCCAGGGGACTTCGGGTTCGACCCCCTGGGCCTCGCCACCGTGCCGGAGA ACTTCGAGCGGTTCAAGGAGTCCGAGATCTACCACTGCCGCTGGGCCATGCTCTGCGTGC CAGGGGTGCTGGTGCCGGAGGCGCTGGGGCTGGGCAACTGGGTGAAGGCGCAGGAGTGGG CGGCGCTCCCAGACGGGCAGGCGACGTACCTGGGCAACCCGGTGCCGTGGGGCAACCTGC CGACCATCCTGGCGATCGAGTTCCTGGCCATCGCCTTCGCGGAGCAGCAGCGCACCATGG AGAATGACCCGGAGAAGAAGAAGTACCCGGCGGCGCCTTCGACCCGCTCGGCTTCTCCAA GGACCCCCGCCAGTTCGAGGAGCTCAAGCTCAAGGAGATCAAGAACGGGCGGCTGGCGAT GCTGGCGTTCGTGGGGTTCTGCGTGCAGCAGTCGGCGTACCCCGGCACCGGCCCG
Homology of Contig U35_41536 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g21590.1 | 242 | 3e-69 | protein|chlorophyll A-B binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g42670.1 | 248 | 2e-73 | |
| Arabidopsis v10 | AT3G54890.1 | 241 | 1e-64 | | Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=241 |