barSeed - Barley Seed Development Database

Probe CUST_10511_PI390587928

Source Contig U35_27243

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10511_PI390587928	Hv_44K_v2	TGAGGTTCTGATGGGTGATGACATCGAAAGAGGATGCAAGTTGGTGTTATTTTCCGTTTT	741	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.073	0.135	0.511	1.555	2.000	2.989
Raw	3.572	13.503	51.298	235.595	105.421	171.153

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39291.1	1087	2e-24	169 - 228	100	60 / 60	minus	ABC26435
JLOC1	JLOC1_25612.1	1067	8e-25	170 - 229	100	60 / 60	minus
Harvest21	ABC26435	876	3e-25	76 - 135	100	60 / 60	minus	ABC26435
Harvest35	U35_27243	876	3e-25	742 - 801	100	60 / 60	plus

Contig Sequence (876 bp)

>U35_27243 876 Hv_44K_v2
GAAAAGGGGAGAGCATGGAGCACCACATGGAGAGCGCGCTGCGTCAGGGGTTGACGGAGC
CGGAGCGGAGAGAGCTGGAGGGCGTGGTGGAGGAGCACCACACATTTCCTGGGCGCGCCA
GCGGGACGTGCACGTCCCTGGTCACGCAGCGCGTGCAGGCGCCGCTCGCCGCCGTGTGGG
ACATCGTGCGCGGCTTCGCCAATCCGCAGCGCTACAAGCACTTCATCAAGTCCTGCGCTC
TCGCCGCCGGCGACGGCGCCACCGTGGGCAGCGTCCGCGAGGTCACTGTCGTCTCTGGCC
TCCCGGCCTCCACCAGCACCGAGCGCCTCGAGATCCTCGATGACGACCGACACATCCTCA
GCTTCTGCGTCGTCGGCGGCGAGCACCGCCTCCGCAACTACCGCTCGGTCACCTCCGTCA
CCGAGTTCACGGACCAGCCTTCCGGGCCGTCCTACTGCGTCGTCGTCGAGTCCTACGTCG
TCGATGTACCAGAGGGCAACACCGAGGAGGACACCCGCATGTTCACCGACACCGTGGTCA
AGCTCAACCTCCAGAAACTCGCCGCCATCGCCACCACCACCTCCTCCCCACCGCCGTTGG
ATGGGCAAAGCTGATCATCGGTGATTCATTGATTGATCGTTCTTGGTTTCTCCATGCCAG
GTCCCGGTTGCATGCAATTCATGCATTGTGATGCTTTTCTGTTTTCTTTTCTGCGCCAAA
AAAGAGAGAATTTAATGTTATTGAGGTTCTGATGGGTGATGACATCGAAAGAGGATGCAA
GTTGGTGTTATTTTCCGTTTTCGCTTTTTGTATGTATATTCCATCGTTATCTTGCAATGT
CATCATGTTATCACTCTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_27243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13330.1	208	4e-89	protein\|bet v I allergen family protein, putative, expressed
Brachypodium v1_2	Bradi3g08580.1	240	8e-90
Arabidopsis v10	AT2G26040.1	190	2e-66	\| Symbols: PYL2, RCAR14 \| PYR1-like 2 \| chr2:11094832-11095404 REVERSE LENGTH=190