barSeed - Barley Seed Development Database

Probe CUST_10507_PI390587928

Source Contig U35_41538

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10507_PI390587928	Hv_44K_v2	AAGTGAAATCCTCATGTAGCATAGATGTTAAAATCTTGTGTCAAGCAGAGAGATAGCTAA	187	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20083.4	765	6e-24	171 - 229	100	59 / 59	minus	None
MLOC	MLOC_20083.2	2262	6e-24	1588 - 1646	100	59 / 59	minus	ABC12717
MLOC	MLOC_20083.1	2605	6e-24	1866 - 1924	100	59 / 59	minus	ABC12717
JLOC1	JLOC1_13933.1	1075	3e-24	551 - 609	100	59 / 59	plus
JLOC1	JLOC1_13932.1	2472	3e-24	1798 - 1856	100	59 / 59	minus
Harvest35	U35_41538	265	3e-25	188 - 247	100	60 / 60	plus

Contig Sequence (265 bp)

>U35_41538 265 Hv_44K_v2
GGGTGGCGCTCCTCGGCTGGGTCTCCTCCTGCCTCACCGTCGCCGGCGACGTCGCGCGCG
CACTCAGAAGCAGCGATCTCTCCGTCTAGGCCACTTTCAACATCGCCGGCAACCAAGAAC
CGACGACTCTGCGTGGCGCGCTCCTCCATAAACAGAGTTCGTCCATAGAAGGACGACTGT
GATGTAGAAGTGAAATCCTCATGTAGCATAGATGTTAAAATCTTGTGTCAAGCAGAGAGA
TAGCTAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_41538 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None