barSeed - Barley Seed Development Database

Probe CUST_104_PI415269222

Source Contig TA50550_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_104_PI415269222	Hv_44K_v2	AAGAACACCAGAGGGGAGCCACACAGACGTTGAAACTTGCAACAATGTCACTCCCCGGCG	40	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376189	2875	2e-24	1686 - 1745	100	60 / 60	plus	ABC10807
MLOC	AK376609	3343	2e-24	2310 - 2369	100	60 / 60	plus	ABC07115 ABC10807
MLOC	MLOC_67740.1	1394	2e-24	1213 - 1272	100	60 / 60	minus	ABC10807
JLOC1	JLOC1_44753.1	1383	8e-25	1202 - 1261	100	60 / 60	minus
Harvest21	ABC10806	617	3e-25	41 - 100	100	60 / 60	plus
Harvest35	U35_19248	1271	3e-25	41 - 100	100	60 / 60	plus

Contig Sequence (523 bp)

>TA50550_4513 523 Hv_44K_v2
CTCGTCGCCCTGTTTCATATCCGGACGAGCCAAACTTCCCAAGAACACCAGAGGGGAGCC
ACACAGACGTTGAAACTTGCAACAATGTCACTCCCCGGCGCTCTCACCGCGAGCTCCTTC
GCCGTCCTCCTCCTCCTCGTCCTCTCCACGTGGCCGACATGCCACGCCACCCACAACATC
ACCGCCATCCTCGCGGCGCGCCGGGACATGTCCGAGTTCAGCCGCCTGCTCACGACGACG
GGCCTCGCGGACGAAATCAACGAGCGCAACACCATCACAGTGCTCGCGGTCGACGACGCG
GACATGGCTCCGCTCAAGGCGCGTCATCTCTCGCGGGAGGCGCTCCGGCACGTGCTCTCC
CTGCACGTCCTCGTCGACTACTACGACCATGACAAGCTGCACCGCCTCCCCGGCGGCTCC
GCCGACGTGTCCACCCTGTTCCAGGCCTCCGGCGACGCGCCCGGCAGCGCTGGCATGGTG
GAGATCTCCGAGCGCCGCGGCGGGAGCGTGGCCTTCGTGCCCC

Homology of Contig TA50550_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49420.1	267	3e-58	protein\|fasciclin-like arabinogalactan precursor protein, putative, expressed
Brachypodium v1_2	Bradi3g56390.1	401	2e-61
Arabidopsis v10	None