barSeed - Barley Seed Development Database

Probe CUST_10490_PI390587928

Source Contig U35_15275

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10490_PI390587928	Hv_44K_v2	GCTATGTGTAATTCCTCCAATCGCTCATATTGAAATAAGCACGGGCCGGACTTTGTTAGC	2363	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.691	3.395	1.152	0.775	0.237	0.176
Raw	937.689	1439.166	407.051	452.336	46.421	39.248

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67940.2	1462	2e-24	4 - 63	100	60 / 60	minus	ABC03135 ABC41444
MLOC	MLOC_67940.1	2267	2e-24	324 - 383	100	60 / 60	minus	ABC03135 ABC41444
JLOC1	JLOC1_44907.1	2160	8e-25	217 - 276	100	60 / 60	minus
Harvest21	ABC03135	2481	3e-25	2364 - 2423	100	60 / 60	plus	ABC03135
Harvest21	ABC41444	380	1e-23	18 - 77	98	59 / 60	minus	ABC41444
Harvest35	U35_15275	2511	3e-25	2364 - 2423	100	60 / 60	plus

Contig Sequence (2511 bp)

>U35_15275 2511 Hv_44K_v2
GTTTGCCCGCTCGCTCCCCTCCTCCTCCCCCCTTTCCCAACCCTGGATCCAAATCCTGAC
CCTCCCCGCACCCGAAACCGAGGCAAGCAAAAGCTTCCCGCGATTATTGGCTAGGTAGAG
AGCGAGGTAGCTCGCTCGCGGCGAGGATCATGAAGCGCGAGTACCAGGACGGCGGCGGGA
GCGGCGGTGGGGGTGATGAGATGGGGTCGTCGAGGGACAAGATGATGGTGTCGTCGTCGG
AGGCGGGGGAGGGGGAGGAGGTGGACGAGCTGCTGGCGGCGCTCGGGTACAAGGTGCGGG
CGTCCGACATGGCGGACGTGGCGCAGAAGCTGGAGCAGCTCGAGATGGCCATGGGGATGG
GCGGCCCCGCCCCCGACGACGGCTTCGCGACCCACCTCGCCACGGACACCGTCCACTACA
ACCCCACCGACCTCTCCTCCTGGGTCGAGAGCATGCTGTCCGAGCTCAACGCGCCGCCGC
CGCCCCTCCCGCCGGCCCCGCCGCAGCTCAACGCCTCCACCTCTTCCACCGTCACGGGCG
GCGGCGGATACTTCGATCTCCCGCCCTCCGTCGACTCCTCCAGCAGCACCTACGCCCTGC
GCCCGATCATCTCGCCGCCCGTCGCGCCGGCCGACCTCTCCGCTGACTCCGTCCGGGACC
CCAAGCGGATGCGCACTGGCGGCAGCAGCACGTCGTCTTCGTCCTCCTCGTCGTCCTCGC
TCGGCGGTGGTGCCGCCAGGAGCTCTGTGGTGGAGGCTGCTCCGCCGGTGGCGGCTGCGG
CTGCTGCGCCCGCGCTGCCGGTCGTCGTGGTCGACACGCAGGAGGCCGGGATTCGGCTGG
TGCACGCGCTGCTGGCGTGCGCGGAGGCCGTGCAGCAGGAGAACCTCTCGGCCGCCGAGG
CGCTGGTGAAGCAGATACCCTTGCTGGCAGCGTCGCAGGGCGGCGCGATGCGCAAGGTCG
CCGCCTACTTCGGCGAGGCCCTCGCCCGCCGCGTCTTCCGCTTCCGCCCGCAGCCGGACA
GCTCCCTCCTCGACGCCGCCTTCGCCGACCTCCTCCACGCGCACTTCTACGAGTCCTGCC
CCTACCTCAAGTTCGCCCATTTCACCGCCAACCAGGCCATCCTGGAGGCGTTCGCCGGCT
GCCGCCGCGTCCACGTCGTCGACTTCGGCATCAAGCAGGGGATGCAGTGGCCGGCCCTTC
TCCAGGCCCTCGCACTCCGTCCCGGCGGGCCCCCTTCGTTCCGCCTCACCGGCGTTGGCC
CCCCGCAGCCGGACGAGACCGACGCCCTGCAGCAGGTGGGCTGGAAGCTCGCCCAGTTCG
CGCACACCATCCGCGTCGACTTCCAGTATCGCGGCCTCGTCGCCGCCACGCTCGCGGACC
TGGAGCCGTTCATGCTGCAGCCGGAGGGCGAGGAGGACCCTAACGAGGAGCCCGAGGTAA
TCGCCGTGAACTCAGTCTTCGAGATGCACCGGCTCCTCGCGCAGCCCGGCGCCCTCGAGA
AGGTCCTGGGCACGGTGCGCGCCGTGCGGCCGAGGATCGTCACCGTGGTCGAGCAGGAGG
CGAACCACAACTCCGGCTCATTCCTGGACCGCTTCACCGAGTCCCTGCACTACTACTCCA
CCATGTTCGATTCTCTCGAGGGCGGCAGCTCCGGCGGCCCGTCCGAGGTCTCATCGGGGG
GTGCCGCTCCTGCCGCCGCCGCCGGCACGGACCAGGTCATGTCCGAGGTGTACCTCGGCC
GGCAGATCTGCAACGTGGTGGCCTGCGAGGGCACGGAGCGCACAGAGCGGCACGAGACAC
TGGGGCAGTGGCGGAACCGGCTGGGCAACGCCGGGTTCGAGACCGTGCACCTGGGCTCCA
ATGCCTACAAGCAGGCGAGCACGCTGCTGGCCCTCTTCGCCGGCGGCGACGGGTACAAGG
TGGAAGAGAAGGAAGGGTGCCTGACTCTCGGGTGGCACACGCGCCCGCTGATCGCCACTT
CCGCATGGCGCCTCGCCGCGCCGTGATCGCGAGTTTTGAACGCTGTAAGTAGACATCGTG
AGAGCATGGAGCGCTACGACACAACCCCGGCCGCCCGCCCGCCCCGGCTCTCCGGCGCAC
GCACACGCACTTGAAGAAGAAGAAGATGAAGAAGAAGCTAAATGTCAGTGATACGCTGAA
TTGCAGCGACCGGCTAGGATCGATCGGGTTACCACTCTACGGTTTGGTTCTGCGTCCGGC
GTGAAGACATGGACACGACCAACTCCGACCAGACCGCCGGCATGTAATGTAATCCCTCCT
TCGTTCCCAGTTCACCATCACCCGTAAAACTCCTTATTAAGCCCTATTACTATTATTATT
ATGTTTAAATGTCTATTACTATTGCTATGTGTAATTCCTCCAATCGCTCATATTGAAATA
AGCACGGGCCGGACTTTGTTAGCAAAAAAAAAAAAAAAAATTTTGTACGCAAGGCACATC
TACTAAAAAGTGAAACCAAGCTTTGTTTGTGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15275 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49990.1	626	0.0	protein\|GRAS family transcription factor domain containing protein, expressed
Brachypodium v1_2	Bradi1g11090.1	624	0.0
Arabidopsis v10	AT1G14920.1	533	2e-163	\| Symbols: GAI, RGA2 \| GRAS family transcription factor family protein \| chr1:5149414-5151015 FORWARD LENGTH=533