barSeed - Barley Seed Development Database

Probe CUST_10479_PI390587928

Source Contig U35_27251

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10479_PI390587928	Hv_44K_v2	GTTCCACCTAATGAACCCAGTAATGGCCAGTGGTTTTATGTGGATGTTCCCATGATTGCA	596	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54797.3	1306	2e-24	703 - 762	100	60 / 60	plus	ABC36024
MLOC	MLOC_54797.1	1500	2e-24	799 - 858	100	60 / 60	plus	ABC36024
MLOC	MLOC_54797.2	1507	2e-24	806 - 865	100	60 / 60	plus	ABC36024
JLOC1	JLOC1_35294.2	1475	8e-25	670 - 729	100	60 / 60	plus
JLOC1	JLOC1_35294.1	1575	8e-25	770 - 829	100	60 / 60	plus
Harvest21	ABC24417	676	3e-25	597 - 656	100	60 / 60	plus
Harvest35	U35_27251	676	3e-25	597 - 656	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_27251 676 Hv_44K_v2
GAGGGAAGGAGGGGGGCGCGTGGTCGAAGCTCTTCCTCTTCGCCCCCGGCGCCATCACCT
TCGGCCTCGGCACATGGCAGCTCTTCCGGCGGCAGGACAAGGTAGAGATGCTGGAGTACA
GGACGCGGAGGCTGGAGATGGAGCCCGTGGCGTGGAACGAGACCGTCTCCTCTGCTGTCT
CGCGTGATCCGGCCGTGCTGGAGTTCCGGAAGATCGTGTGTGAGGGCGATTTCGACACGG
AGAAGTCCGTCTTCCTCGGGCCTCGCTCCCGGAGCATCTCCGGTGTGACGGAAAATGGGT
ATTATGTGATCACTCCGTTGATACCTCGGCCGGCTGAGTCTGGCAGTTTGCAGTCACCTA
TCCTTGTGAATAGAGGGTGGATTCCTCGGGCTTGGCGTGATAAAAACATACAGGACCACC
AGGACCTTGGTGAAACTTTAGTTGTGAAAGAGGCCGATAAAAAGACAGATGAAAAAGGTA
CTTGGTGGAAATTGTGGTCTAAGAAGCCTGAATCTACTCCAGAGATTGAAGAACCTGTAA
AGCCTCCTGTAAAAGTTATTGGAGTAATCCGAGGAAGTGAGAAGCCCAGCATATTTGTTC
CACCTAATGAACCCAGTAATGGCCAGTGGTTTTATGTGGATGTTCCCATGATTGCACGTG
CATGCGGCCTCCCTGA

Homology of Contig U35_27251 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10360.1	344	2e-116	protein\|SURF1, putative, expressed
Brachypodium v1_2	Bradi1g71180.1	341	3e-126
Arabidopsis v10	AT3G17910.1	354	7e-76	\| Symbols: SURF1 \| Surfeit locus 1 cytochrome c oxidase biogenesis protein \| chr3:6133581-6136053 FORWARD LENGTH=354