barSeed - Barley Seed Development Database

Probe CUST_10476_PI390587928

Source Contig U35_27253

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10476_PI390587928	Hv_44K_v2	ACTGCCCACATCTTAGTACCACGGTGTCTGTGCAGTGGAGAGGCTGGGTTTCCCTTACTG	367	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67954.2	1504	2e-24	376 - 435	100	60 / 60	plus	ABC15214
Harvest21	ABC23825	434	3e-25	368 - 427	100	60 / 60	plus
Harvest35	U35_27253	434	3e-25	368 - 427	100	60 / 60	plus

Contig Sequence (434 bp)

>U35_27253 434 Hv_44K_v2
GAGGTCGAAACCATTGCTTTCCATCCATCAGCCATGATTTCGGGGGTGTCATCTCCTCGG
AAGCTCTTGCTACTGGCGGCCGCTCTTCTTACGCTGTCTGTGGCCATGGCGGCGTCGCCT
GCGGCTGCGCCGGCGAACCAGAGCAGCTGCTACAAGCGTCTATTCAGCTTCGGTGACTCT
CTGATCGACACCGGGAACTACATCGTCCACTTCTCCACCACGCCGGGTCCGGTCATGGAG
TTGCCATACGGCGAGACTTTTTTCGGCCGCCCCACCGGCCGCTGGTCCGACGGCCGCCTC
ATCGTCGACTTCATCGGTAACTTCTTCTTCGGCGACCATGATGATGTACACCAGGCGTGC
TTTAAGTACTGCCCACATCTTAGTACCACGGTGTCTGTGCAGTGGAGAGGCTGGGTTTCC
CTTACTGGCCGGCG

Homology of Contig U35_27253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None