barSeed - Barley Seed Development Database

Probe CUST_10474_PI390587928

Source Contig U35_41548

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10474_PI390587928	Hv_44K_v2	AAGCGCTCTCCGGCCAGCGAGAAAGCAAGAAAAGCAGAGGCATGAAGATCCAGTGCGACT	51	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39632.1	1342	2e-24	932 - 991	100	60 / 60	minus	ABC06358 ABC12706
JLOC1	JLOC1_25850.1	1387	8e-25	212 - 271	100	60 / 60	plus
Harvest21	ABC06358	1110	3e-25	65 - 124	100	60 / 60	plus	ABC06358
Harvest35	U35_41548	655	3e-25	52 - 111	100	60 / 60	plus
Harvest35	U35_16265	1109	3e-25	84 - 143	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_41548 655 Hv_44K_v2
TCCCTTTCTTCCTCGCAGCACCCTTATCTCTTCTCCGGCTCAAGCCTAGCAAAGCGCTCT
CCGGCCAGCGAGAAAGCAAGAAAAGCAGAGGCATGAAGATCCAGTGCGACTCGTGCGGGG
TCGCGGCGGCCACGGTGGTGTGCTGCGCGGACGAGGCGGCGCTGTGCGCGCGCTGCGACG
TGGAGATCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGAGGCTCCCGCTCGACGCGC
TCGGCGCCAAGCTCCCGCGCTGCGACATCTGCCAGGAGAAGGCCGCCTTCATCTTCTGCG
TCGAGGACAGGGCGCTCTTCTGCCGCGACTGCGACGAGCCCATCCACGTCCCAGGCACGC
TCTCCGGGAACCACCAGCGCTACCTCGCCACCGGCATCCGCGTCGGCCTCGGCCCCGTCT
CCACCTGCGCCGCCGGGGACCACGGCGCAAGCCACGACGCCGACCACCACGCCCCGCCAA
AGGTCGCCTGCGACCACCAGCCGTGGACGAGCTCCTGCAGTTCTCGGACTACGAGTCCCA
GCGACAGCTGCACAAGGACTCGACTCTCGGCTTCAAGGAGCTGGAGTGGTTCACCGNCGA
CATGGAGCTCTTCCACGACCACGCGCCCAAGGGCGGCAGGGGCGGCATGGAGGTA

Homology of Contig U35_41548 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39360.1	272	5e-54	protein\|B-box zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi3g48180.1	259	2e-66
Arabidopsis v10	None