barSeed - Barley Seed Development Database

Probe CUST_10464_PI390587928

Source Contig U35_39236

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10464_PI390587928	Hv_44K_v2	TGTCAATAAATCCTTAGTTTATGATGATACATCCAATGGAACTAAGACATGGAGGCGTGC	497	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374713	2434	2e-24	521 - 580	100	60 / 60	plus	ABC09434
MLOC	MLOC_72916.1	754	2e-24	537 - 596	100	60 / 60	plus	None
MLOC	MLOC_72916.2	793	2e-24	576 - 635	100	60 / 60	plus	None
JLOC1	JLOC1_48529.2	600	8e-25	386 - 445	100	60 / 60	plus
JLOC1	JLOC1_48529.1	710	8e-25	496 - 555	100	60 / 60	plus
Harvest21	ABC35289	603	3e-25	498 - 557	100	60 / 60	plus
Harvest35	U35_39236	603	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_39236 603 Hv_44K_v2
GGGGCGGACCGCGCCGCCGCGGCGCCTCGTTCTCGCCGCCTGTCCCCGTCTCGGCAGCTC
CGCCGGCCGGGCGGGTCCCTACTCTAGTACCTCCTCGGACCCCCACCCTCGCCTCACCCC
GCGCCTTCCCCGCCTTCTCCGCCGCGATTCCCTGACAGAACCTCGTCGGCCTCTCCGCTG
CGCCGCCCCGCGATGAAGCTGAAGCCAGGCATGTCGGCCCTCGTCACCGGCGGCGGCTCC
GGCATTGGGAAAGCACTTTGCGTTGCTCTTGCACAGAAGGGTCTAGCTGTGACTGTCGTC
GATTTCTCTGAAGAACATGGAGGACAAGTTGCGGCATTAATTCAAAAGGAAAGCAAACAG
TTCCGTGGAGATTCTAAAGTTCCGTCTGCTACATTCATCAAGTGTGATGTTACTGATGCT
GATGCTCTTGCTGCCGCTTTTGGGAAACATGTACACTTGTATGGTGGATTAGATGTCTGC
ATCAACTGTGCTGGATTTGTCAATAAATCCTTAGTTTATGATGATACATCCAATGGAACT
AAGACATGGAGGCGTGCTGTAAATGTGAACCTTGTTGCTGTTATTGATGGTACTCGCATC
GCA

Homology of Contig U35_39236 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28570.3	565	7e-67	protein\|zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed
Brachypodium v1_2	Bradi4g32260.1	635	9e-72
Arabidopsis v10	None