barSeed - Barley Seed Development Database

Probe CUST_10463_PI390587928

Source Contig U35_39237

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10463_PI390587928	Hv_44K_v2	TTTGAAAGGTGCAGTTGTGACAGCAGATCGAATTGTGACCGTCAGTCAGGGTTATTCATG	704	GeneList: saddlebrown MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.222	0.295	0.994	1.471	1.183	1.157
Raw	176.059	301.954	1066.916	2269.927	700.536	740.578

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70501.2	1918	2e-24	890 - 949	100	60 / 60	plus	ABC01808
MLOC	MLOC_70501.1	2121	2e-24	800 - 859	100	60 / 60	plus	ABC01808 ABC33098
JLOC1	JLOC1_46788.1	2229	8e-25	879 - 938	100	60 / 60	plus
Harvest21	ABC01808	2362	3e-25	1070 - 1129	100	60 / 60	plus	ABC01808
Harvest35	U35_39237	764	3e-25	705 - 764	100	60 / 60	plus
Harvest35	U35_14589	2362	3e-25	1070 - 1129	100	60 / 60	plus

Contig Sequence (764 bp)

>U35_39237 764 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTAGCAAGCTGTTTGTAAAATCGTGTTAGCTCTATGTTGATTA
CACCGAGCATGGTCGATTGGATTGGATTCAAGCAGTATCCGTTCACGGATTCCGTTCTTT
TTTGCAAACTAGAGCTAGCATAGGTTTTACATACAAATCAGTTGTCAAAAACCCGAGTAA
GATGAAGAACCAAGAAAGGAAAGATTGGCTGTCAAATAATCTTTCTTCAGCTAACTGTGG
TTTGGTCTGCTTGTCTTGGGTAAAATTTCGCCATCTGCCGCCTTTCTCTTGCGGATGTTG
CTTGATCATCCATCATATCATAGACCAGGAAGTTTGTATGGAGATAATTTTGGTGCTTTT
GGTGATAATCAGTTCAGATACACACTACTTTGCTATGCTGCTTGTGAGGCCCCACTAATC
CTTGAATTGGGAGGATATATTTATGGACAGAGTTGCATGTTTGTTGTGAACGATTGGCAT
GCCAGCCTTGTGCCAGTCCTTCTTGCTGCAAAGTATAGACCATATGGAGTTTACAGAGAT
TCTCGCAGCACTCTTGTTATACATAATTTAGCACATCAGGGTGTGGAGCCTGCAAGTACA
TATCCTGATCTGGGATTGCCACCTGAATGGTATGGAGCTTTAGAATGGGTATTTCCAGAA
TGGGCAAGAAGGCATGCCCTTGACAAGGGTGAGGCGGTTAACTTTTTGAAAGGTGCAGTT
GTGACAGCAGATCGAATTGTGACCGTCAGTCAGGGTTATTCATG

Homology of Contig U35_39237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06560.1	642	4e-105	protein\|starch synthase, putative, expressed
Brachypodium v1_2	Bradi1g48610.1	657	1e-106
Arabidopsis v10	AT5G24300.1	652	3e-83	\| Symbols: SSI1, SSI, ATSS1 \| Glycogen/starch synthases, ADP-glucose type \| chr5:8266934-8270860 FORWARD LENGTH=652