barSeed - Barley Seed Development Database

Probe CUST_10457_PI390587928

Source Contig U35_15283

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10457_PI390587928	Hv_44K_v2	AATATTTCAGCTGATCCCCTTCTGTCATCATTTGGCCTTAGCTTCCCAACATTAGATGCT	777	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.156	0.305	1.036	2.254	1.437	1.241
Raw	43.091	135.696	396.061	1394.104	303.458	286.935

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62564.1	3807	2e-24	3189 - 3248	100	60 / 60	plus	ABC02909
MLOC	MLOC_62564.2	1505	2e-24	496 - 555	100	60 / 60	minus	ABC02909
JLOC1	JLOC1_40951.1	2362	8e-25	906 - 965	100	60 / 60	plus
Harvest21	ABC02911	698	3e-25	326 - 385	100	60 / 60	plus
Harvest21	ABC02909	1413	3e-25	778 - 837	100	60 / 60	plus	ABC02909
Harvest35	U35_15283	1413	3e-25	778 - 837	100	60 / 60	plus

Contig Sequence (1413 bp)

>U35_15283 1413 Hv_44K_v2
GCTGCAGGCCGATGACGCGGTGGGGGACGGCGACCCGGTCCGGCCCCGGTGGCGAATAAT
AAAAGCGGCGCCGTGCCTCCATCCCTCACTCCTCCCCTCCCCTCCCCTCCCCTCCCGTCC
CCCGTCTGTCCGTCCGTCCGTCCGTCCGTCCCCTACACATCTCGTTCCCCAACCAGCGAT
AAGGCGGACAGCGACCGAGAGAAGCTCCCTCCTCGCCTCGCCTCGCATCCTCCTCCCTCC
CCTGTCTCCCACCAGCTGATCCGCGCGCGGGGTCGGGAGAGGAGCGGCGCGTGCGAGAGC
CGGCCCTATATTCTACCTACCCATCTATCTATCTACGCCGGCATGGACTCGGAGCACTGG
ATCTCGCGCCTGGCCGCCGCCAAGCGGTTCTACGCAGCGCAGCTCGGCCACGCCGATCGG
GCGGGGATGGACGAGCTGGACATGGACGGCGACGAGAACGCCGGCAGGCCCGACTTGGCC
TGCCCCTACTGCTACGAGGACCACGACGTCGCCTCCCTGATCGCCCACCTCGAGGAGGAG
CACCCCTTCGAGCCCCACGCCGCGCCTTGCCCTATCTGTTCCGAAAAGGTTTCTAAAGAT
ATGCTTAATCATATCACCATGCAACATGGGTACTTGTTCAAGAATCGCCGCAGGTTGCGC
AGATTTGCTGTTCCAGGCAGCCAGTCGCTCTCTCTGCTGAGCCGGGATCTACGTGAAGCC
CATTTGCAGGTGCTTCTGGGAGGTGGTGGGCATAGGTCGAGCAACAATAATGCGGCAAAT
ATTTCAGCTGATCCCCTTCTGTCATCATTTGGCCTTAGCTTCCCAACATTAGATGCTGAG
GAAACATCAAAATTGTCTACTCCTGCTCAGAGTGATGTACCAGTGCTAAAAGAGGCAGCT
GCTCGGCCGTGGCGGTCAAGTATTGACTTGTCCCTCACAAGGGAAGAAAGGGAGCAAGCC
AGCGTGAGAGCGGCATTCGTGCAAGACCTGCTGCTCTCCACCCTATTCAGAGACCAATAA
CTCAGAGGCAAGCCGATGTTACCGCTGCCCTGGTGCAGACTCCGAAAGGTCGGTGCCCCC
AGACCAAGTCCCCAAATGTGATATCCATGGAAGATAGGGTTTGGGCACCCCAGCAAGGAA
GGAGGTGCATCAGATCAGAGTTGATGTGGGCATGAGGTGTCCTAAGTTATTTGTAGCCGG
TCTTTGTGTTGAGTTCCATCTCAGTTATCGCACGCGGTCTCGCAGGCGAGATAGATATCT
GCGCAGGTCGCGGTGGTGTCTGTACCGTACCATACCGCTGCTTCTTTGCTTACAAGCATT
GTTTTTGTTGTACCAGTTACATAATAATGTTGTGTTGCTATGCAACAGCAGAAGGGTATG
CAGTTTACTTATTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15283 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48800.1	227	5e-90	protein\|drought induced 19 protein, putative, expressed
Brachypodium v1_2	Bradi2g16670.1	231	1e-88
Arabidopsis v10	None