barSeed - Barley Seed Development Database

Probe CUST_10454_PI390587928

Source Contig U35_15286

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10454_PI390587928	Hv_44K_v2	AAGCATTGTTTTTGTTGTACCAGTTACATAATAATGTTGTGTTGCTATGCAACAGCAGGA	1000	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.291	0.430	0.965	1.532	1.184	1.175
Raw	311.701	738.435	1431.148	3383.887	965.369	1044.152

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62564.1	3807	2e-23	3725 - 3782	100	58 / 58	plus	ABC02909
JLOC1	JLOC1_40951.3	1661	1e-23	1357 - 1414	100	58 / 58	plus
JLOC1	JLOC1_40951.2	1647	1e-23	1343 - 1400	100	58 / 58	plus
JLOC1	JLOC1_40951.1	2362	1e-23	2058 - 2115	100	58 / 58	plus
Harvest21	ABC02914	1271	3e-25	4 - 63	100	60 / 60	minus
Harvest21	ABC02909	1413	4e-24	1314 - 1371	100	58 / 58	plus	ABC02909
Harvest21	ABC51256	477	2e-22	412 - 469	98	57 / 58	plus
Harvest21	ABC02913	1390	8e-21	1325 - 1382	97	56 / 58	plus
Harvest35	U35_15286	1063	3e-25	1001 - 1060	100	60 / 60	plus
Harvest35	U35_15283	1413	4e-24	1314 - 1371	100	58 / 58	plus

Contig Sequence (1063 bp)

>U35_15286 1063 Hv_44K_v2
GGCATCCTCCTCCCTCCCTGTCTCCCACCAGCTGATCCGCGCGCGGGGTCGGGAGAGGAG
CGGCGCGTGCGAGAGCCGGCCCTATATTCTACCTACCCATCTATCTATCTACGCCGGCAT
GGACTCGGAGCACTGGATCTCGCGCCTGGCCGCCGCCAAGCGGTTCTACGCAGCGCAGCT
CGGCCACGCCGATCGGGCGGGGATGGACGAGCTGGACATGGACGGCGACGAGAACGCCGG
CAGGCCCGACTTGGCCTGCCCCTACTGCTACGAGGACCACGACGTCGCCTCCCTGATCGC
CCACCTCGAGGAGGAGCACCCCTTCGAGCCCCACGCCGCGCCTTGCCCTATCTGTTCCGA
AAAGGTTTCTAAAGATATGCTTAATCATATCACCATGCAACATGGGTACTTGTTCAAGAA
TCGCCGCAGGTTGCGCAGATTTGCTGTTCCAGGCAGCCAGTCGCTCTCTCTGCTGAGCCG
GGATCTACGTGAAGCCCATTTGCAGCTTCCCAACATTAGATGCTGAGGAAACATCAAAAT
TGTCTACTCCTGCTCAGAGTGATGTACCAGTGCTAAAAGAGGCAGCTGCTCGGCCGTGGC
GGTCAAGTATTGACTTGTCCCTCACAAGGGAAGAAAGGGAGCAAGCCAGCGTGAGAGCGG
CATTCGTGCAAGACCTGCTGCTCTCCACCCTATTCAGAGACCAATAACTCAGAGGCAAGC
CGATGTTACCGCTGCCCTGGTGCAGACTCCGAAAGGTTGGTGCCCCCAGACCAAGTCCCC
AAATGTGATATCCATGGAAGATAGGGTTTGGGCACCCCAGCAAGGAAGGAGGTGCATCAG
ATCAGAGTTGATGTGGGCATGAGGTGTCCTAAGTTATTTGTAGCCGGTCTTTGTGTTGAG
TTCCATCTCAGTTATCGCACGCGGTCTCGCAGGCGAGATAGATATCTGCGCAGGTCGCGG
TGGTGTCTGTACCGTACCATACCGCTGCTTCTTTGCTTACAAGCATTGTTTTTGTTGTAC
CAGTTACATAATAATGTTGTGTTGCTATGCAACAGCAGGAAGG

Homology of Contig U35_15286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48800.1	227	2e-61	protein\|drought induced 19 protein, putative, expressed
Brachypodium v1_2	Bradi2g16670.1	231	8e-60
Arabidopsis v10	None