barSeed - Barley Seed Development Database

Probe CUST_10441_PI390587928

Source Contig U35_27264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10441_PI390587928	Hv_44K_v2	TGAATGGGGAGAGCGTTACAATATAATTAGTGGTATTTGCAAGGGATTACACCACCTCCA	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13441.3	4527	2e-24	641 - 700	100	60 / 60	plus	ABC12222 ABC12946 ABC17435
MLOC	MLOC_13441.1	3238	2e-24	714 - 773	100	60 / 60	plus	ABC12222 ABC12946 ABC17435
MLOC	MLOC_13441.2	3308	2e-24	672 - 731	100	60 / 60	plus	ABC12222 ABC12946 ABC17435
JLOC1	JLOC1_9100.9	3309	8e-25	489 - 548	100	60 / 60	plus
JLOC1	JLOC1_9100.8	3516	8e-25	492 - 551	100	60 / 60	plus
JLOC1	JLOC1_9100.7	3524	8e-25	554 - 613	100	60 / 60	plus
JLOC1	JLOC1_9100.6	3541	8e-25	575 - 634	100	60 / 60	plus
JLOC1	JLOC1_9100.5	3409	8e-25	643 - 702	100	60 / 60	plus
JLOC1	JLOC1_9100.4	3634	8e-25	668 - 727	100	60 / 60	plus
JLOC1	JLOC1_9100.3	3501	8e-25	681 - 740	100	60 / 60	plus
JLOC1	JLOC1_9100.2	3738	8e-25	714 - 773	100	60 / 60	plus
JLOC1	JLOC1_9100.1	3656	8e-25	832 - 891	100	60 / 60	plus
Harvest21	ABC25180	596	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_27264	596	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_27264 596 Hv_44K_v2
GCAAGTCCTCACTGACCAGGGACCTTCACTGCCGTCAACCAGTCAACCAGGATATCGAGG
CATATGATTGCAAATGGATCGCCATTCAACTCCTACACAAAGCGACCTGGAGCGCATGCT
ACTTGATGTAGAGGCGGAACCGAGGGCCCTGCCATTATCCCTCCTCGAAGATATCACTGA
TCAATTTTCTGATGAGAGTGAAATTGGCAGAGGTGGATTCGCAGTGGTCTATAAGGGAAT
GCTTGAGAACGGGGTGGCCGTTGCTGTGAAGAAGCTATTCAAACCATATATTTATGAGAA
AGAATTCGATCGAGAGGTTGAGTGTCTGATAACGGCGAAGCACAAAAATGTGATTCGATT
TATTGGATATTGTGCTGACTCACAAAGGAGAGCAGAAAACTACAATGGAAAATTTGTCAT
GGCAGATGTACAACACAGATTGCTCTGCTTTGAGTATCTACCTCATGGAACTCTTGATAA
ATATATCAGTGATGAGTCTTGTGGACTTGAATGGGGAGAGCGTTACAATATAATTAGTGG
TATTTGCAAGGGATTACACCACCTCCATCANAATCGAATTCTTCACTTGGATCTTA

Homology of Contig U35_27264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g21870.1	152	2e-56
Arabidopsis v10	None