barSeed - Barley Seed Development Database

Probe CUST_10438_PI390587928

Source Contig U35_27265

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10438_PI390587928	Hv_44K_v2	CGTGTCTTCTCAGCATAGAACTGTCCACACTTCTTTGTTGAGAAGGCTCATAAGTACAGC	970	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17595.2	1384	2e-24	1206 - 1265	100	60 / 60	plus	ABC16911
MLOC	MLOC_17595.1	1255	2e-24	1078 - 1137	100	60 / 60	plus	ABC16911
JLOC1	JLOC1_12145.2	1320	8e-25	1077 - 1136	100	60 / 60	plus
JLOC1	JLOC1_12145.1	1320	8e-25	1077 - 1136	100	60 / 60	plus
Harvest21	ABC47458	553	3e-25	494 - 553	100	60 / 60	plus
Harvest35	U35_27265	1030	3e-25	971 - 1030	100	60 / 60	plus

Contig Sequence (1030 bp)

>U35_27265 1030 Hv_44K_v2
GGGTACCTCGTCTGCGTGGTGGACAGGAGCTGGATGCCGTGGGGAGGGAGGGATTCGAGG
TGAAGGTTGGGGTGGTGGCCATCGAGGTGTCCACCGGCGAGGTCGTGCACGGGGAGTTCA
TGGACGGCGCATCCAGGAGCGGGCTTGAGGCCGTGCTGCTTGGCCTGGCACCCGTTGAGG
TCATCCTCGGTACCCCGCTCTCGTTTGCTACGGAAAAGCTGATGAGGGCATATGCGGGAC
CTGTCTCTAACGTACGGGTTGAGTGCACTTCGCGTGATTGTTTTAGTGAGGGAGGCGCTT
TAGCAGAACTGATGTCTTTGTTTGAGAAATCGGAGGCGATCAAAATAAATGAAGAGGACA
GCAATCTTCATGGGATGGAGGGTGTCATGGCTATGCCAGAGCTAGTTGCCCAAGCAATGG
CATTGAGTGTTCGCTATCTGAAGGGTTTTGGTATGGAGAGGTTAATCTGCTTTGGCTCTT
CGTTCCGGCCATTTACTGCTAATACTGAGATGTCTCTATCAGCAAACGCTCTTCAACAGC
TTGAGGTATTAAAGAACAACTCAGATGGTTCAATAGAAGGATCACTGTTCCAAACTATGA
ACAACACATGTACAGCTTTTGGATCTAGGCTATTTAGACACTGGTTGACTCACCCCTTAT
GTGATAGAAATCTAATATGTGCTCGTCACGATGCAATCTCTGAGATCTCTGAATCGATGG
GATCACGACAAGATCCTGTTCACATTCGACAGGATGAAGAGGATGGGTGCTGCGCAGCTT
CCGTGCGAAGTGATCTCAGCACCATTCTTTCATCTGTTTTAACAATGTTAGGAAGATCAC
TTGATTCTCAAAGAGGAATAACAAGAATTTTTCACTGCAAAGCCACAGCTAAAGAGTTTT
TTGGGGTCATCCAGGCTATCTTGGAGGCTGGAAAGCAACTGCGGAAGCTTGTTCTCGAGG
ATACTGAGAACGTGTCTTCTCAGCATAGAACTGTCCACACTTCTTTGTTGAGAAGGCTCA
TAAGTACAGC

Homology of Contig U35_27265 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58630.3	624	0.0	protein\|DNA mismatch repair protein MSH3, putative, expressed
Brachypodium v1_2	Bradi5g26812.1	1606	0.0
Arabidopsis v10	AT4G25540.1	1081	1e-101	\| Symbols: MSH3, ATMSH3 \| homolog of DNA mismatch repair protein MSH3 \| chr4:13042700-13048115 REVERSE LENGTH=1081