barSeed - Barley Seed Development Database

Probe CUST_10434_PI390587928

Source Contig U35_27269

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10434_PI390587928	Hv_44K_v2	ACTTCTACCACGTCATGACGGCGATGGTGCCGCTGTACGTGGCGATGATGCTCGCGTACG	192	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12686.1	2510	2e-24	14 - 73	100	60 / 60	plus	ABC18698
MLOC	MLOC_12686.2	2223	2e-24	12 - 71	100	60 / 60	plus	ABC18698
JLOC1	JLOC1_8518.2	2554	8e-25	14 - 73	100	60 / 60	plus
JLOC1	JLOC1_8518.1	2256	8e-25	14 - 73	100	60 / 60	plus
Harvest21	ABC22297	541	3e-25	193 - 252	100	60 / 60	plus
Harvest35	U35_27269	541	3e-25	193 - 252	100	60 / 60	plus

Contig Sequence (541 bp)

>U35_27269 541 Hv_44K_v2
GCCTCCCCCATATCGCCACCGCGCCCGCGCCATAAATCAAGCGAGCGCAGCTCCACTTGA
ACGCCGCACCTCACCGCACCGCACGCCTCCCCTGCCACGCCGCCGTGTCAGCGTAGGAAG
GAAGAGCGAGCGTTTGTTGTCGCAGCGGCGGCGGCGGCGGCGGCCGGCACGGCAAGATGA
TCACGGGCACGGACTTCTACCACGTCATGACGGCGATGGTGCCGCTGTACGTGGCGATGA
TGCTCGCGTACGGGTCCGTCAAGTGGTGGCGGATCTTCACGCCGGACCAGTGCTCCGGGA
TCAACCGCTTCGTGGCGCTCTTCGCCGTGCCGCTGCTGTCCTTCCACTTCATCTCCAGCA
ACAACCCCTACACCATGAACCTCCGCTTCATCGCCGCCGACACCCTGCAGAAGCTCATCG
TGCTCGCGCTGCTCACCCTCTGGAGCCACCTCTCCCGCAACGGCTCCCTCGAGTGGACCA
TCACCCTCTTCTCCCTCTCCACGCTGCCCAACACCCTCGTCATGGGCATCCCGCTCCTCA
A

Homology of Contig U35_27269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12610.1	593	3e-75	protein\|auxin efflux carrier component, putative, expressed
Brachypodium v1_2	Bradi1g45020.1	597	6e-77
Arabidopsis v10	AT1G73590.1	622	2e-68	\| Symbols: PIN1, ATPIN1 \| Auxin efflux carrier family protein \| chr1:27659772-27662876 FORWARD LENGTH=622