barSeed - Barley Seed Development Database

Probe CUST_10428_PI390587928

Source Contig U35_15758

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10428_PI390587928	Hv_44K_v2	TTCTTCAAAGACTACGCTGAAGCCCATGCTAAGCTGAGCAACCTTGGTGCAAAGTTTGAT	1102	GeneList: saddlebrown MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.013	0.030	0.808	2.319	1.490	1.759
Raw	4.531	19.804	496.059	2312.308	500.204	644.246

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373891	1711	2e-24	1074 - 1133	100	60 / 60	plus	ABC04135
Harvest21	ABC04135	1400	3e-25	627 - 686	100	60 / 60	minus	ABC04135
Harvest35	U35_15758	1751	3e-25	1103 - 1162	100	60 / 60	plus

Contig Sequence (1751 bp)

>U35_15758 1751 Hv_44K_v2
CACGCGTCGCGCCGCCATTGGGGACCCTGGATTAAGCAACTTCCCTCTCTCTCTCTCCCA
CCACGAGCCTCTCGCTGGCCACCTCAGCTCAGGCCTCACTCCGCCTCCATTGTTCCACCG
ATTCCCTCCCCGGTTCTCGTTTCCAGACACTCCAAACCCCGCCATGGCGGAGCGGCTCGC
GTCCTCGGCCACCCTCCTCCCCAGCGCGGCCTCGCCGTCCTCCTCGACCCGCCGCGCCGC
CGTCGCCTCCGCCGGGCTCCGCCTCCGCCCGTCGCCGTCGCGCTTCTCACAGGCTGCGAG
GAGAGCCCGCGGTGGCGCCGCCGCCGCTGGGGTGGTGCCGCGGCTGCGGGTGGTCCGATG
CATGGCGGCGTCGGATGCCGCGCAGCTCAAGAGCGCGCGGGAGGACATCAAGGAGATCCT
CAAAACCACCTACTGCCACCCCATCATGGTCCGTTTGGGATGGCATGATTCGGGTACTTA
TGACAAAAATATCGAGGAGTGGCCACAGAGAGGTGGAGCCGACGGAAGCTTAAGATTTGA
TCCTGAGTTGAGTCATGGAGCCAATGCTGGTCTTACTAATGCTTTAAAGCTCATTCAACC
AATCAAGGACAAATACCCAGGTATCACCTATGCCGATCTGTTCCAGTTGGCGAGTGCGAC
AGCAATTGAGGAAGCCGGTGGCCCAAAACTTCCGATGAAATACGGGAGGGTAGATATCAC
AGCACCCGAGCAGTGTCCACCTGAGGGGAGGCTTCCTGACGCTGGTCCACGCATACCTGC
TGAACACCTTAGGGATGTATTCTATAGGATGGGCCTTGATGACAAGGAAATTGTCGCATT
GTCCGGCGCACATACACTTGGAAGGTCACGCCCTGACAGGAGTGGCTGGGGAAAGCCAGA
AACAAAATACACAAAGGACGGGCCTGGTGAACCTGGAGGGCAATCATGGACAGCTGAATG
GTTGAAGTTTGATAACAGCTACTTCAAGGACATAAAAGAGCAAAGGGATCAGGAGCTTCT
AGTATTGCCTACAGATGCTGCACTATTTGATGACCCATCATTCAAGGTATATGCAGAGAA
GTACGCAGAGGACCAGGATGCATTCTTCAAAGACTACGCTGAAGCCCATGCTAAGCTGAG
CAACCTTGGTGCAAAGTTTGATCCTCCTGAGGGATTCTCGTTGGACGATGACAAGGGTGC
CGCGGCAACCGACGAGAAGGCGGTTGCTGATCCAGAGCCAACGGTTGTTGCTCCAGAGCC
AAATGCTGTTGCTCCAGAGCCAACGGTTGCTGCACCAGCCCCAGCGGATGCTACTAATGG
CGCAGGACCGCAACCAGAGCCCTTCGTTGCCGCCAAATACTCTTACAAGAAGAGAGAGTT
GTCCGACACGATGAAGCAGAAGATCAGAGCCGAGTACGAGGGCCTTGGAGGCAGCCCGGA
TAAGCCTATGCAGTCCAACTACTTCCTCAACATTATGATCGTGATCGCAGGATTGGCATT
CTTGACGTCTCTGGTCGGGAACTAAGATCGATGGTCTGATGAGTCTTTCTTCTTTTTCAT
CTGGTGTAATTAACCATTTTCCAGGGACTGGTGTGCCGACATGCAAGATGACTAAGGCAA
TGCTTTTGGTCATCTTACGTTGTCTTGAGTTTTCATCATTTGAAGTAAAGTGAGGCAAAC
CTAGTAAATTGCTGGAAACCATGGGATGTTTCCTACCTTTTTGTTGTCTTGCTCATACTT
ACATCATCTCG

Homology of Contig U35_15758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g34810.1	479	protein\|OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed
Brachypodium v1_2	Bradi3g45700.1	441
Arabidopsis v10	AT1G77490.1	426	\| Symbols: TAPX \| thylakoidal ascorbate peroxidase \| chr1:29117688-29120046 FORWARD LENGTH=426