barSeed - Barley Seed Development Database

Probe CUST_10420_PI390587928

Source Contig U35_27736

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10420_PI390587928	Hv_44K_v2	GCCAGTATCTCTCGATGATAGCTGTGAATGCTATGCCCGGCACAAGCGAGATGCAACTGC	654	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.404	1.838	1.153	0.626	0.393	0.369
Raw	96.621	98.185	63.645	52.886	11.480	12.116

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59087.1	2999	2e-24	2234 - 2293	100	60 / 60	minus	ABC18358 ABC34566
JLOC1	JLOC1_38426.1	1501	8e-25	736 - 795	100	60 / 60	minus
Harvest21	ABC23115	714	3e-25	655 - 714	100	60 / 60	plus
Harvest35	U35_27736	714	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (714 bp)

>U35_27736 714 Hv_44K_v2
ACTAGTGGATCCAAAGCTTCTCCCCATTCCGTCCGAACCCCACCCAAACCCCACGAGCTA
GCCCACCATGGCGCCGCCGCCGCCGCCGCCGCCGTCGGTCAACCTCATCGACGACGTCGT
CGCAGAGATACTCCTCCGCCTCCCGCCGGATGAGCCCGAGCACCTCTTCCGCGCCGCCCT
CGTCTGCAAGCCCTGGCTCCGCGTCATCTGCGACCCCGCCTTCCGCCGCCGGTACCGCGC
GTTCCACGGCGCCCCTCCGCTGCTCGGCCTCCTCCACAGGACCCAAGTCTTCGACGGAGA
CCCCGACCCGCGCTTCGCCTCCACCACGTCGATGCCCGACTTCCCCCACCCAGGCTCCGA
CGGCCGCCACACGCGCCCCCTCGACTGCCGCCACGGCCGCGTCCTCATCCACATGTTCCA
TGACCAGGGTATGGATCTCCTCGTCTGGGACCCCGTCACCGGCGACCGTCACGTCATGCC
CGTCCCGGACATCGACTGGATGATCTACACCGCCAGCGTGTTCTGCGCCACCGCCGGCTG
CGACCACCTCGACTGCCACGGCGGGCCCTTCCGCGTGGTCTTCCTGGCCACCGACGGCGA
CCAAGACGTCGTCAAGGCGAGCGTGTACTCATCGGTGACAGGTGCGTGGAGCGAGCCAGT
ATCTCTCGATGATAGCTGTGAATGCTATGCCCGGCACAAGCGAGATGCAACTGC

Homology of Contig U35_27736 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g23900.1	379	4e-87	protein\|OsFBX234 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi1g58955.1	335	7e-52
Arabidopsis v10	None