barSeed - Barley Seed Development Database

Probe CUST_103_PI415269222

Source Contig TA50456_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_103_PI415269222	Hv_44K_v2	CACCCTTCAATAGTCCAGATTCTAATTGATAGAAACAAAAGAAAGGCAGTTGATGTAGAT	814	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251112.1	2462	2e-24	820 - 879	100	60 / 60	plus	ABC18520
Harvest21	ABC18095	934	3e-25	789 - 848	100	60 / 60	plus
Harvest35	U35_7482	960	3e-25	815 - 874	100	60 / 60	plus

Contig Sequence (882 bp)

>TA50456_4513 882 Hv_44K_v2
AGACCACCCGTTCCCTCCACACTCGCGTTCTCGCTCGCACTAGCACTTGGAGTAGCAGGC
AGGGAGGATGGCCGGGAGCAGCGTCTCCGGCGGCGGCGGCGGCGGCCGCCCGTCGCTGTT
CGCGACGGAGAAGCCGAAGCGGGTGCTGGCGTACCGGCTGTACGCGGGCACCATCTTCGC
GGGGATCCTCCTCATATGGTTCTACAGAGCCACCCACATCCCGGCGAGGGGCAGCAGCAG
CCTGGGGTGGCGGGCGGGGCTCGGGCTGCTCGTGGCCGAGCTCTGGTTCGGCCTCTACTG
GGTCCTCACCCTCTCCGTGCGCTGGAACCCGGTCCGCCGCACCACCTTCAAGGACCGCCT
CTCGGCCAGCTATGACGATGACCAGCTCCCCGCCGTGGACATATTTGTGTGTACAGCGGA
CCCAGATCTTGAACCACCCATGCTTGTCATATCCACGGTTCTGTCTGTCATGGCTTATGA
CTACCCGCCAGAGAAGCTAAACATCTATTTGTCTGATGATGCTGGTTCCGCGATAACATT
CTACGCTCTTCATGAGGCATCTGAGTTTGCAAAGCACTGGATTCCATTTTGCAAAAATTA
CAAGGTGGAGCCCAGGTCCCCAGCTGCCTACTTTGCCCAAGGAGATACCCCTCATGATGC
TTGTAGCCCTCAAGAATTGCTTCGCATGAAGGAGTTGTACAAGGATCTGACAGATCACGT
GAATTCAGTAGTACATTCAGGCAAGATTCCCGAGGTTCCAGAATGCAACCGCAGAGGCTT
CTCTGAATGGAACGAGACGATAACACCTGGAGATCACCCTTCAATAGTCCAGATTCTAAT
TGATAGAAACAAAAGAAAGGCAGTTGATGTAGATGGAAATGC

Homology of Contig TA50456_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49332.1	746	7e-131	protein\|CSLE2 - cellulose synthase-like family E, expressed
Brachypodium v1_2	Bradi3g56440.1	738	3e-154
Arabidopsis v10	AT1G55850.1	729	2e-68	\| Symbols: ATCSLE1, CSLE1 \| cellulose synthase like E1 \| chr1:20876752-20879414 FORWARD LENGTH=729