- Probe CUST_103_PI390587928
- Source Contig U35_36895
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_103_PI390587928 | Hv_44K_v2 | CTTCATCATTGCTGGATCTACTGTCATCAAGCTCCCTCAGATACTAAAGATTTTGAAGCA | 396 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.054 | 0.045 | 0.312 | 2.376 | 2.227 | 3.405 |
| Raw | 2.646 | 2.691 | 41.982 | 518.667 | 160.159 | 262.990 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_20017.2 | 1415 | 2e-24 | 800 - 859 | 100 | 60 / 60 | minus | ABC41270 |
| JLOC1 | JLOC1_13882.1 | 1735 | 8e-25 | 692 - 751 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32357 | 456 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36895 | 456 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus |
Contig Sequence (456 bp)
>U35_36895 456 Hv_44K_v2 GCTCTCTCTCACTTTGCTTGAATCTAGAAATTGATTAGTGAGCATGTTTCCAGGGTGCCA CATGCTCTGCTCTCCCACCACCAGTAGTTCATTGCAACCCTGTCCAGTTGACAGAAAAAC ATGCTCTACAGCCCCCACAGCTCTCATCCTAAAACTTTCAAGGGAACCTTCATCCTTGAT GGCTTGCTGCGTGACGAAGCCTTCAACAGGGACCCGATTGCTCCCGGGTTTCCGAATTTT GGAGAACCTGGAGATGAGCAACGGAAGGATATCAGCCAGTGGGGCACCACTGAAAATCTT TGGCACGGACATAGGGTACATCTGGTCAGCATCGCTGGGTGCTAAGATCCCTTCCAGGGA CTCCCTGCTACCATTCTTGTCGACAGCCCTTGGGTACTTCATCATTGCTGGATCTACTGT CATCAAGCTCCCTCAGATACTAAAGATTTTGAAGCA
Homology of Contig U35_36895 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |