barSeed - Barley Seed Development Database

Probe CUST_10398_PI390587928

Source Contig U35_27743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10398_PI390587928	Hv_44K_v2	TTCAAGAATGCCGATCGGCACGAAGAGATCGAGAAAGCTTTTGAAGAAAAACCAGTGCCA	511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355444	3269	2e-24	1707 - 1766	100	60 / 60	plus	ABC20716
MLOC	MLOC_26281.1	2077	2e-24	1366 - 1425	100	60 / 60	plus	None
MLOC	MLOC_26281.2	1879	2e-24	1170 - 1229	100	60 / 60	plus	None
JLOC1	JLOC1_17850.1	2059	8e-25	1352 - 1411	100	60 / 60	plus
Harvest21	ABC25205	694	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_27743	694	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_27743 694 Hv_44K_v2
AGATGCCATTGAGGTGTTCCACCGCCAGCCCAGGAGGAACGTCCAGATGGACGTCGGCTG
CTTCAACAACATCATCGGGAAGCTCTGTGAGAAGGGGATGCTTGCAGAGGCAGAGAAGCT
CTTCGAGGAGATGGAGAGCAAGTCGGTGCTTCCAGATGTGTACACTTACACTTTCCTGGT
CGACTTGTGCTTCAAGGAAGGTCGTGTGGATGACACGATGCAGTACTTCTACAAAATGGC
AGATGGAAGGGAGCACGGCCCCAAGTTCAACATCGGCTTTTTCAATAGAATGTTTGAAGG
ACTTTCACAAGCTGGCCGGATTGATGATGCCTTGAAGGTGTATGGAAGGATGGCTGACAA
GGAGATCAAGCCGAACACAACCACATTTGAAATCCTGGTTAATGCACTGTGCAAGGAAGG
GGAATTGGATAGAGCATTGGACCTGGTGAGGGACATGGCAAGGGGTGGTGTTGTCGCAAC
TCCTGAGTTCCGGGAGTCTGTCGGTGAGATTTTCAAGAATGCCGATCGGCACGAAGAGAT
CGAGAAAGCTTTTGAAGAAAAACCAGTGCCACTGCCTCCTCAGCCAAGACCAGAGGTTCG
CCCTCGCAGTTCACCTCAGGGGCTGCCAGGGTTTGCATCTAATCAGACACAGAGCAGCTA
CACACCTAACCAAGGCCAACCAGGTTATGGGTCT

Homology of Contig U35_27743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g30240.1	912	1e-119	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g54360.1	821	9e-121
Arabidopsis v10	None