- Probe CUST_10393_PI390587928
- Source Contig U35_27748
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10393_PI390587928 | Hv_44K_v2 | CAAAATTAACGATTTTGTGATCATACAACAACATATATAGAGGTGTACTTTTCGGCGTCC | 480 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.161 | 3.348 | 1.143 | 0.448 | 0.901 | 0.802 |
| Raw | 24.226 | 43.105 | 11.993 | 5.275 | 3.150 | 3.013 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363383 | 2590 | 2e-24 | 2505 - 2564 | 100 | 60 / 60 | plus | ABC25307 |
| MLOC | MLOC_40821.1 | 630 | 2e-24 | 542 - 601 | 100 | 60 / 60 | plus | ABC25307 |
| JLOC1 | JLOC1_26659.1 | 612 | 8e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25307 | 557 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus | ABC25307 |
| Harvest35 | U35_27748 | 557 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus |
Contig Sequence (557 bp)
>U35_27748 557 Hv_44K_v2 GACGGGGCGGGGGCCGGCGGACCACGCGTCGCCGTCGACGTCCGCGTCCTTCTCGGGGCC GTCCACGACGACGACGGACCGGTCCGGGAGCGCGGAGCACGAGGCCGTGCCGGAGGTGGT GCGGTGGGTGCGGCGCGGGTTCGAGGACGCGCGGCCGGTGGCGGAGATGGTGGACCCGGC GCTGCTGCGGGAGGCGCCGACGCTGCCCAAGAAGGAGATCGTCGCCGCGTTCCACGTCGC GCTGGCGTGCACCGAGGCCGACCCGGAGCTCCGGCCCAAGATGAAGACCGTCGCCGACAG CCTCGACAAGATCGGGTCCTGAGCATCACGGCCATTCAATGGCTTACGCTGCCACGATAT GTGTTCATGACAGGCTCTTCGGAGAAAGTCTCATTTTACTTTCTTTCCTCTCTCTCTCAA GGTCTTCATATTCTTTTTTTCATTTCTTGTAATTGGGGTTTTCTTGGCTATTTGTTCTGA CAAAATTAACGATTTTGTGATCATACAACAACATATATAGAGGTGTACTTTTCGGCGTCC AAAAAAAAAAAAAAAAA
Homology of Contig U35_27748 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |