barSeed - Barley Seed Development Database

Probe CUST_10392_PI390587928

Source Contig U35_27749

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10392_PI390587928	Hv_44K_v2	TTATCTCTTTAACTACTACATCAAACCTTTCATCTATAAGTCCCCGGACCAGTTCTCTGA	378	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.310	0.258	0.330	2.259	2.780	5.062
Raw	2.787	2.851	6.759	84.954	34.745	70.643

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11922.1	1128	2e-24	454 - 513	100	60 / 60	minus	None
JLOC1	JLOC1_7952.1	1282	8e-25	616 - 675	100	60 / 60	plus
Harvest21	ABC21353	528	3e-25	379 - 438	100	60 / 60	plus
Harvest35	U35_27749	528	3e-25	379 - 438	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_27749 528 Hv_44K_v2
GCGACTACATCGACACTGTCGCCAAGGCAAATTTCCCTCCTACGGTAGGGACTTTGAGGA
CCATATCGCCACAGGGAGATTTTGCAACGGCAAGATCCTCAGCGATTTCATAGGTGAAAT
CCTGGGGTTTACTAGCTCCCCCTATGCATATCTCAGCCCGGACGCGTCGGGAGAGAATCT
TCTTAGTGGAGCTAACTTTGCATCGGCCGCATCCGGCTATTACGACCAAACGGCGCATAT
GTATAACGTTATCCCTTTGTCCCAACAGTTAGAGTATTTCAAAGAATACCAACATAAGCT
GGAAGTGCTAGCTGGGAGCAGCCAGGCTCAGTCTATCATCTCAGACTCACTCTATATCAT
CAGTGCTGGTTCAAATGATTATCTCTTTAACTACTACATCAAACCTTTCATCTATAAGTC
CCCGGACCAGTTCTCTGACCTCCTTATCGGGATCTTCAACAACACTGTAGCGGAACTTTA
CGGCATGGGAGCTCGGCGCATCGGTGTTTTCTCTTTGCCAAGTTTTGG

Homology of Contig U35_27749 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05550.1	352	8e-76	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi1g50927.1	360	7e-75
Arabidopsis v10	AT5G22810.1	337	2e-60	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:7621568-7623367 FORWARD LENGTH=337