barSeed - Barley Seed Development Database

Probe CUST_10381_PI390587928

Source Contig U35_15773

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10381_PI390587928	Hv_44K_v2	ACGTGCCGTGTAAATTTATGTGTTCTTGTGTAACAGAAGACTGAGACTGCACTAGCTAAA	1274	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.498	0.809	1.176	1.618	0.953	1.110
Raw	1762.447	4531.287	5811.053	12308.087	2572.030	3256.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_50177.1	1526	1e-23	1379 - 1436	100	58 / 58	plus
Harvest21	ABC04238	1404	3e-25	1275 - 1334	100	60 / 60	plus	ABC04238
Harvest35	U35_15773	1411	3e-25	1275 - 1334	100	60 / 60	plus

Contig Sequence (1411 bp)

>U35_15773 1411 Hv_44K_v2
GCATAGCTACTCACTGATCCCACTGGACGGTTCGCTACTGGCAACATTCACGCCTGCGCT
TCCGTCCCGTGACTTGCCTGGCCCTGCCTCTGCGGCTGCGAGCTTCGGTCCGCCATGGCG
CAAACCTCATCGATTCCCCGCGTCAGCCTCGGCACCCAAGGACTGGAGGTGTCTAAGCTG
GGGTTCGGGTGCATGGGCCTCACAGGCTCGTACAACTCCCCCGTCGAGGACGACGCCGGC
GTCGCCGTCGTCACGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTC
TACGGGCCCCACACTAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAG
AAGGTGCAGGTGGCCACCAAGTTCGGGATCCAGCGGGACGCCCAGGGCAAGAGCACCATC
TGCGGCCGCCCGGAGTACGTCCGCGCCTGCTGCGAGGCCAGCCTCCACCGCCTCGGCGTC
GACCACATCGACCTCTACTACCAGCACCGCATCGACACCACCATCCCCATCGAGGACACG
ATTGGTGAGCTCAAGAAGCTTGTGGAGGAGGGGAAGGTCAAGTACATTGGGTTATCGGAG
GCGAGCCCCGACACCATCAGGCGTGCTCACGCTGTGCACCCCATCTCTGCTGTGCAGATG
GAGTGGTCTCTGTGGGCACGCGACATCGAGCCCGAGATTGTGCCTCTCTGCAGAGAACTA
GGGATTGCAATTGTTCCCTACAGCCCGATTGCCCGTGGGTTTTTCGGTGGAAGGGGAGTG
ACACAACAAGTGTCTGCTGAATCTAGTCTGAAAGGCCATCCACGTTTTTCTGCTGAAAAC
CTGGAGAAGAACAAGCAACTTTATCTGAAAATGGAAGAACTGGCCAAGAAGCACCATTGC
AGCCCTGCTCAGCTAGCTTTAGCCTGGGTTCTGCATCAAGGGGATGATGTGGTTCCGATA
CCAGGGACAACTAAGATCAAGAATCTAGACTCCAACATTGACTCCTTAAAGGTGAAGCTC
ACAGAAGATGACCTCAAAGAGATTAGCAATGAGATACGCGAAGAAGATGTGGCCGGTGGA
AGGCAATATACTTCATTTGCGAAATTCACCTGGAATTATGCAGATACGCCGAAGAAGTGA
AACTAAAAAAGATTGTGGAGACAGTGATATGTGCGAGCAAAACATGCCATGATATCTGCT
ACTGTGATGAATGGTGCTCCCTGTATCTTCATCTTGTGAATTGTCCCGTGAATAAGAACA
ATTGCACTGTCTCCACGTGCCGTGTAAATTTATGTGTTCTTGTGTAACAGAAGACTGAGA
CTGCACTAGCTAAAAAAAAAAAAATCTAGTCTTACGGGCTTTCCGTGAAAAAAAAAAAAA
AAGGCTTTTGTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43090.1	345	0.0	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi2g43690.1	343	0.0
Arabidopsis v10	AT1G60690.1	345	5e-122	NAD(P)-linked oxidoreductase superfamily protein \| chr1:22349892-22351668 REVERSE LENGTH=345