barSeed - Barley Seed Development Database

Probe CUST_10380_PI390587928

Source Contig U35_15774

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10380_PI390587928	Hv_44K_v2	ATACCATGGCACCATGTATCTTTGGATAAATCAAATCATGATGGAAGTACCGTTGTCTCA	680	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54933.2	999	2e-24	444 - 503	100	60 / 60	plus	None
MLOC	MLOC_54933.3	2358	2e-24	174 - 233	100	60 / 60	plus	None
MLOC	MLOC_54932.1	5607	2e-24	309 - 368	100	60 / 60	plus	ABC09200
MLOC	MLOC_54933.1	2626	2e-24	285 - 344	100	60 / 60	plus	None
MLOC	AK368536	773	7e-23	715 - 771	100	57 / 57	plus	None
JLOC1	JLOC1_35387.1	3746	8e-25	1406 - 1465	100	60 / 60	plus
JLOC1	JLOC1_35389.1	3208	8e-25	1536 - 1595	100	60 / 60	minus
Harvest21	ABC01261	2076	3e-25	681 - 740	100	60 / 60	plus
Harvest35	U35_15774	767	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (767 bp)

>U35_15774 767 Hv_44K_v2
GCCCCCCCCCCCCCCCCCAAAGTCGAAACCCCTCCTCCAAGCAGATCGGCCGAGAGCGAT
GGAGGCGAAGATGAGCAAGTTCTTCGACTCGGTGGGCTCCTTCTTCTCCGGCGGCGACAA
CATCCCCTGGTGCGACCGCGACATCATCGCCGGATGCGAAAGAGAGGTTGCTGAGGCTGC
AACCGAAGAACAGAAAAATGATAGCATTATGAGGCTATCTTGGGCTCTCGTCCATTCCAA
GCAGACTGATGATGTGAACCGTGGAATTGGCATGATTGAAGCTTCTCTTGATAAAACCAC
CAGCCCACTGCAGACTAGAGAAAAACTGTATTTGTTGGCTGTTGGGCACTACAGAAATGG
TAACTATGTAAGAAGCCGGCAACTTGCGGACCGCTGTTTGGAGATTCAACCTGATTGGCG
GCAGGCATCATCTCTGAAGAAGGCAATAGAGGATAAAATTGCTAAAGATGGTGTGATTGG
CATAGGAATCGCCACAACTGCAGTAGGGCTTATCGTTGGTGGGATTGCAGCTGCTCTTGC
AAGGAAGAAGTGAGATCCCACCCGCCTACTGATGAAGTAGGATGTGCGTTTGGTTCTGTA
TTTTCAGTAGCTCTACCGTTCATTCTGTGTTACTTGAGTCGAATCGCCGCAACTATCTAT
GTGCATAAAATGAGTTTATGATACCATGGCACCATGTATCTTTGGATAAATCAAATCATG
ATGGAAGTACCGTTGTCTCAAGCAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31770.1	165	6e-75	protein\|tetratricopeptide repeat containing protein, putative, expressed
Brachypodium v1_2	Bradi2g26780.2	165	1e-83
Arabidopsis v10	AT3G57090.1	170	1e-60	\| Symbols: BIGYIN, FIS1A \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:21128627-21129981 FORWARD LENGTH=170