barSeed - Barley Seed Development Database

Probe CUST_10379_PI390587928

Source Contig U35_15775

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10379_PI390587928	Hv_44K_v2	TCGTGTACGTACGGCTGATCGGGGGATCAAATAAAATTAAACATTTGGATCTCCAAAAAA	1233	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	67.600	11.806	0.998	0.552	0.755	0.802
Raw	5148.440	1339.527	105.947	99.191	41.780	53.025

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC09200	1279	8e-21	1199 - 1250	100	52 / 52	plus	ABC09200
Harvest35	U35_15775	1305	3e-25	1234 - 1293	100	60 / 60	plus

Contig Sequence (1305 bp)

>U35_15775 1305 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACACAGCGAACTCGGCGACCAGTGTAGCCATCATCGTCT
CCGTCTCCTCAAATTAATCTTTCGCTAGCAATTCTTGTCAGGGCGACAATGGCTGACGAA
GTTCAGGCGCTCACCAAGGCCTTCTCAGGTCTGGGGGGTCTGGGCGTGGACGAGCGGACG
ATGGTGGCGGCGCTGGCGAACTGGCGGAAGCAGCCGGAGAAGCGGTCGGGGTTCCGGAAG
AGCTTCCCGGGGCTGTTCAAGGAGCACGGCGGCGTGATGGAGCGGTGCGAGGACGAGTAC
ATGCTGCACCTGGCCGCCGAGTTCTCCCGGTTCAAGAACCTGATGGTGCTGTGGGCGATG
CACCCGTGGGAGCGCGACGCCCGCCTCGCGCACCACGTCCTCCACCAGGCCCACCCCTCC
GCCATCGTCGTGGAGATCGCCTGCACCCGCTCCGCCGAGGAGCTCCTCGGCGCGCGCAAG
GCCTACATGGCGCTCTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAAGGAC
AAGCCCTACTGCAGCCTGCTGGTGGGGCTGGTGAGCGCGTACCGGTACGAAGGGCCCAAG
GTGAGCGACGACACGGCCAAGGCGGAGGCCAAGGCGCTGGGAGCGGCGGTGAAGAGCGCC
GACGGCGGCAAGCTGGTGGAGAACGACGAGGTGGTAAGGATCCTCACCACCAGGAGCAAG
CCTCACCTCGTCCAGACCTTCAAGTACTACAAGGAGCTGCACGGCAAGCACATCGAGGAG
GATCTCGGAAGCGAGGAGGCTCTGAGGGAGGCCGTGCAGTGCCTGGCGACGCCGGAGAGG
TACTTCAGCCAGGTGATGGCGGCGGCGCTGAGGGAGGGCGCGGACCACCACGGCAAGGAG
GCCCTGTCGCGGGTGGCGGTGACGCGGTCGGACGTGGACATGGACGGCATCAGGGCGGCC
TACCAGGAGCAGTTCGGGGCCAAGCTCGAGGACGCCGTCGCCGGCAGCGCGCACGGCCAC
TTCAAGGACGCGCTCGTCTCGCTCATCGTCGGCAAGTAAACCATTGGACGCGGAGGGGGT
TCGTCTTCGTCTTCTCGTCTTCCGGTGGTGGTGACTGTCGCGCCATGCCGTGCGTGTTTT
CTTTTTTCCTGCTTCATCTAGTGTCGCTCGCGTGTGCCTTTGTATGCTGATTGAATCGTT
GTTGGGCGGGGAATGTAACATTTGCAGCTGAGGTCGTGTACGTACGGCTGATCGGGGGAT
CAAATAAAATTAAACATTTGGATCTCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31750.1	320	2e-177	protein\|annexin, putative, expressed
Brachypodium v1_2	Bradi2g26760.1	317	0.0
Arabidopsis v10	AT2G38750.1	319	6e-72	\| Symbols: ANNAT4 \| annexin 4 \| chr2:16196582-16198431 REVERSE LENGTH=319