barSeed - Barley Seed Development Database

Probe CUST_10373_PI390587928

Source Contig U35_27751

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10373_PI390587928	Hv_44K_v2	CATTACCCACAGCTGTACCTTTATCTACTGTTGAATAGTTGGCTTAATAAACTTTTCGTA	428	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.451	1.722	1.357	0.943	0.317	0.322
Raw	240.876	450.251	306.129	337.670	39.829	43.474

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79660.1	6042	2e-24	1646 - 1705	100	60 / 60	minus	ABC25353
MLOC	MLOC_79660.2	4782	2e-24	1089 - 1148	100	60 / 60	minus	ABC25353
JLOC1	JLOC1_53042.2	4546	8e-25	4413 - 4472	100	60 / 60	plus
JLOC1	JLOC1_53042.1	4396	8e-25	4263 - 4322	100	60 / 60	plus
Harvest21	ABC25353	517	3e-25	30 - 89	100	60 / 60	minus	ABC25353
Harvest35	U35_27751	517	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (517 bp)

>U35_27751 517 Hv_44K_v2
GGAAACGGTTAGTTGATGAGCTGAATGGAATCACCTGTACGATTGGAGCAGCGATTCATG
CCGATGAGGATCTGAAGGCAAGCTTGGCAAGGATCATGCAGAAAGCCAACATCGAGGAGC
CTCTCTTGAGTTCTAGCAGCAAAGAAATGCCTAGCTTAGAGAAACCAAACGTGAGAAATC
ATTCGCCCCTGACCAGGAACAAATCTGCAGCTCTCCCAGATAGAAGATTGCCACTAAAAG
AGAACAACTATTAGTCTTGGTAGGTGAGGTCAGATTGTGCACTGACATTGTTGTAATCTC
TGTATCCTATTTCTTGCTGCCGTCTGTATTATTTTGTTTACACAGAATGGCCATGTTTAT
CCGAAATTTCCTTTGTCAGTTGCCTTTTAAACAATCTGGCTAATAAATAGAATGTGTTTG
TTGTAGTCCATTACCCACAGCTGTACCTTTATCTACTGTTGAATAGTTGGCTTAATAAAC
TTTTCGTAATCTTTTGCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None