barSeed - Barley Seed Development Database

Probe CUST_1035_PI390587928

Source Contig U35_40176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1035_PI390587928	Hv_44K_v2	CAAAAGCTGGGCTGAGCATCTCAGTGCATGCATAAATAATGAACAGGACAGGCCAAAGAA	395	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356712	2121	2e-24	394 - 453	100	60 / 60	plus	None
MLOC	MLOC_58592.9	2123	2e-24	411 - 470	100	60 / 60	plus	None
MLOC	MLOC_58592.7	2451	2e-24	497 - 556	100	60 / 60	plus	None
MLOC	MLOC_58592.6	1376	2e-24	514 - 573	100	60 / 60	plus	None
MLOC	MLOC_58592.5	1961	2e-24	501 - 560	100	60 / 60	plus	None
MLOC	MLOC_58592.2	2331	2e-24	513 - 572	100	60 / 60	plus	None
MLOC	MLOC_58592.1	1186	2e-24	513 - 572	100	60 / 60	plus	None
MLOC	MLOC_58592.3	2460	2e-24	530 - 589	100	60 / 60	plus	None
MLOC	MLOC_58592.8	2576	2e-24	483 - 542	100	60 / 60	plus	None
MLOC	MLOC_58592.4	1657	2e-24	518 - 577	100	60 / 60	plus	None
JLOC1	JLOC1_38085.10	2354	8e-25	498 - 557	100	60 / 60	plus
JLOC1	JLOC1_38085.9	2272	8e-25	481 - 540	100	60 / 60	plus
JLOC1	JLOC1_38085.8	2106	8e-25	498 - 557	100	60 / 60	plus
JLOC1	JLOC1_38085.7	2275	8e-25	498 - 557	100	60 / 60	plus
JLOC1	JLOC1_38085.6	2067	8e-25	481 - 540	100	60 / 60	plus
JLOC1	JLOC1_38085.5	2333	8e-25	485 - 544	100	60 / 60	plus
JLOC1	JLOC1_38085.4	2372	8e-25	502 - 561	100	60 / 60	plus
JLOC1	JLOC1_38085.3	2355	8e-25	485 - 544	100	60 / 60	plus
JLOC1	JLOC1_38085.2	2254	8e-25	485 - 544	100	60 / 60	plus
JLOC1	JLOC1_38085.1	2376	8e-25	528 - 587	100	60 / 60	plus
Harvest21	ABC36505	456	3e-25	396 - 455	100	60 / 60	plus
Harvest35	U35_40176	456	3e-25	396 - 455	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_40176 456 Hv_44K_v2
GGTCGAGCTCAACAACGGCAACAGAAGAGAGGGGAGACCATGCAGGCCGACGGCGAGGTG
CTGTTCCTGGGCGGCGTCGGAGAGGTCACCGTCACCCTCGGCCACGACGGCCTCTCCTTC
CTCCCTCTCCACCCGGAATTGGGTTCTTCATGTTGGTCATCTATCGGACTACTACCAAAA
TTGGAGAACAAAATCAAGTTTTTGGATGTTTATGCTGTGGAGCTTCTTGATGAAGGTCCT
GTATGTGGACCTTGGAATACAAGAATTGTCGTCCAAGGCAAGAAAAATACTGAGATGCAC
CGGTTTGCCGTACATGTAATCACCAGGTCAAGAAAACACCCTTCTCAGTGGGTACCTTGT
GAATATCTTTTTGGACACAAAGACCCGGAGACCTGCAAAAGCTGGGCTGAGCATCTCAGT
GCATGCATAAATAATGAACAGGACAGGCCAAAGAAC

Homology of Contig U35_40176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43912.1	297	1e-54	protein\|ceramide kinase-related, putative, expressed
Brachypodium v1_2	Bradi3g50590.1	609	2e-63
Arabidopsis v10	None