barSeed - Barley Seed Development Database

Probe CUST_10354_PI390587928

Source Contig U35_15784

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10354_PI390587928	Hv_44K_v2	AGTGCATTGTGCTCTCTTAACCTTGAAAAACCATGAGGAGTTTCCGAAAAGGAAGTAAGC	2019	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.587	1.606	1.198	0.940	0.363	0.398
Raw	2307.460	3697.421	2371.300	2923.930	395.082	472.056

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_47232.2	1918	4e-23	1828 - 1887	98	59 / 60	plus
JLOC1	JLOC1_47232.1	1932	4e-23	1842 - 1901	98	59 / 60	plus
Harvest21	ABC03922	2110	3e-25	2020 - 2079	100	60 / 60	plus	ABC03922
Harvest35	U35_15784	2110	3e-25	2020 - 2079	100	60 / 60	plus

Contig Sequence (2110 bp)

>U35_15784 2110 Hv_44K_v2
GCTACTCCTTCCGGATCCTTCCTTCCTCCCCCGACTCACACTCCCTCCCCGCCGTTTCTC
CGATCCGCCGCCGGCCAGCAGCCGCCGCCGCCATGTCGATCCGCATGCTGAACCAGAACG
CGGAGGTGATGAACAAGTCGGCGGCCCTGGCCATGAACATCGGCGCCGCCAAGGGCCTCC
AGGACGTCCTCAAGACCAACCTCGGCCCCAAGGGCACCATCAAGATGCTCGTCGGTGGAG
CTGGAGACATCAAGCTGACCAAGGACGGGAACACCCTCTTGAAAGAAATGCAAATCCAGA
ACCCAACAGCAATCATGATTGCGAGGACAGCGGTGGCGCAGGACGACACGAGCGGCGATG
GCACCACATCCACGGTGCTTTTCATCGGGGAGCTTATGAAGATGTCTGAGCGATGCATCG
AAGAAGGTACTCATCCACGTTTTTTGGTTGATGGCTTTGAGGTTGCCAAGAAAGCAACTC
TTGAATTTCTCGAGACATTCAAGACATCAGTCGTTATTGGTGATCAACCCGACAGGGAGA
TCTTGAAAATGGTAGCAAGAACAACTCTCAGGACAAAGCTGTATGAAGGATTGGCTGATC
AGTTGACTGATATTGTTGTAAATGCGGTCCTATGCATCCGCCAAAGTGATCAACCAATTG
ATCTTTTTATGGTGGAAATAATGCATATGCGCCACAAATTCGACGTCGACACACGTCTGA
TCGAGGGTCTAGTCCTTGACCATGGTTCTCGGCACCCTGACATGAAGCGCAGAGCAGAGA
ATTGTTACATCCTGACAGCTAATGTATCACTGGAATATGAGAAAAGTGAAATAAATGCAG
GATTCTTCTACTCAAATGCAGAACAAAGAGAAAAGATGGTTACTGCAGAGAGGCGTCAAG
TTGATGAACGTGTCCAGAAGATCATTGAATTAAAAAATAAGGTTTGCGCCGGAACTGACA
AGAATTTTGTGGTGATCAACCAAAAGGGCATCGATCCTCCATCCCTCGATCTCCTAGCTA
GAGCTGGGATTATTGCTCTCCGAAGAGCGAAGAGGAGGAACATGGAGAGACTTGTGCTAG
CATGCGGTGGCGAAGCCATCAATTCAGTTGAAGGCATGACTGAAGAATGTCTTGGCTGGG
CTGGGCTTGTCTATGAGCATGTTCTTGGAGAAGAAAAATACACGTTCGTGGAGAATGTTA
AGAATCCTCACTCCTGTACTATATTGATCAAAGGACCTAATGATCACACCATTGCACAAA
TTAAGGATGCCGTACGAGATGGTCTAAGATCTGTGAAGAATACAGTTGAGGATGAAGCTG
TTGTGCTGGGCGCAGGAGCGTTTGAGATAGCTGCAAGGAAGAATCTCATTGACAATGTGA
AGAAAACCGTTAAAGGACGAGCCCAACTCGGGGTGGGAGCATTTGCCGACGCTCTACTTG
TTATCCCCAAGACGCTAGCGGAGAATTCGGGTTTAGATACCCAGGACGTTATTGTCTCCC
TAGAGAATGAGCACGACCGTGGGCTGGTGGTGGGGCTGAACCATAACACTGGCGAGCCGG
TTGACCCGGAGATGGAAGGCATCTACGACAACTACTCGGTGAAGCGCCAGATCGTCAATT
CCGGACCCATCATCGCGTCGCAGCTGTTGCTAGTGGACGAGGTGATCAGGGCAGGCCGCA
ACATGAGGAAACCGACCTAAACATAGCGCTCGCTCCTTTCAGGCCGAGGCGAGAGTTTTT
GTTTGGCTGTTTTGCTCTCTGGTGTGCCGAGTAGCGAGTAGTGATGCGGTGGGGTGGGGA
ATGCTTGAACGGAAGAGATTGTACTTGTTGTGACAGTGTGTGCCCTTGTGGTGTCGATCT
GTTTCTACGCTCGTGTTTGTATGCAGAATGTTTTGCTGGATCAAGTTGAGTAGCTATGTA
TTTTTTGTGCGCGCTTTCGGCGATTTGGTTCTCGTTTCTGTTAGAATTATGTAATCCATT
CTGTCTTGTCGTAGGGGTGAATTATAATCAATCCTGGTTAGTGCATTGTGCTCTCTTAAC
CTTGAAAAACCATGAGGAGTTTCCGAAAAGGAAGTAAGCATTNTCACTTGGTCATAAAAA
AAAAAAAAAA

Homology of Contig U35_15784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g05470.1	536	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi3g04130.1	536
Arabidopsis v10	AT3G02530.1	535	TCP-1/cpn60 chaperonin family protein \| chr3:528806-532457 REVERSE LENGTH=535