barSeed - Barley Seed Development Database

Probe CUST_10352_PI390587928

Source Contig U35_15786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10352_PI390587928	Hv_44K_v2	CGAGGGCGTCGCGTTTCTTTTAAAGCGTTTTTAAATGTTATATAGGAAAACGTTTTTAGA	1180	GeneList: white MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.098	1.369	1.366	1.101	0.496	0.446
Raw	1797.057	3508.559	3068.097	3809.110	604.342	595.274

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC03925	1284	3e-25	1181 - 1240	100	60 / 60	plus
Harvest35	U35_15786	1472	3e-25	1181 - 1240	100	60 / 60	plus

Contig Sequence (1472 bp)

>U35_15786 1472 Hv_44K_v2
GTCCATCCCCTTCTAAAATCTACACTCTCCCATCTCCAGTCCACTCTCCACCCACCACCA
CCACCACTCCCCCACACCCCGCCGGCGATCGCGCGATGGCGGCGGCCGCACCCCCTCCCG
CGGCGGCGCTGGAGCAGCTGAGCAAGACCAAGATGTTCGGCGGCCACAACCTCCGCTTCC
GCCACCAGAGCGCCGCCCTCGGCTGCCCCATGACCTTCTCCCTCTTCCTCCCCGCGTCGC
CGGCCTCCAAGCTCCCCGTGCTCTACTGGCTCTCCGGCCTCACCTGCACCGACGAGAACT
TCATCATCAAGTCCGGCGCCCAGCGCGCCGCCGCGGCACACGGCGTCGCCCTCGTCGCCC
CCGACACCTCCCCGCGTGGACTAAATGTTGAAGGAGAGGCAGATAGTTGGGATTTTGGTG
TTGGTGCTGGATTTTATTTGAATGCCACAAATGAGAAGTGGAAAAACTGGCGCATGTACG
ACTATGTTGTGAAGGAGCTGCCAAAAGTTCTTAGTGACAACTTTGAACAGCTTAACACGT
CATGTGCATCAATTTTTGGCCACTCTATGGGAGGGCATGGTGCACTCACTATCTACTTGA
AGAACACTGACAAATACAAGTCGGTGTCTGCATTTGCTCCAATTGCTAACCCAATAAACT
GCCCATGGGGCCAGAAAGCATTCTCAAACTATCTGGGCACAACTAAATCAGAATGGGAGG
AATACGATGCAACATTCTTGGTCAAGAAGTGCAACACGGTTTCAACTTCTATCCTGATTG
ACCAGGGAGAGGATGACAAGTTCCTGGCGGAGCAGCTGCTGGCGGGCAACTTTGAGGAGG
CGTGCAAGTCGGCGGGCGTTCCAGTGACCCTCCGCATGCAGCCGGGGTACGACCATTCCT
TCTTCTTCATCGCCACCTTCATCGACGATCACATCGCGCACCACGCCCAGTTCCTCAAGA
GCGCATGACTTGCCAGTCACATCTAGCGATGTCATCGCTAAAATCTCAGATTGCAAACCT
GTGTTATCACCCGTATGCGCCCATGCAGTCTGTGTGTTAGATTGAGAGACTGGACGAACC
GTGTTGAAATAACGTGCGAAGCGCGCGTGCGTCGCTTGGCTGTAAGTTCACGTCATTCGG
TAGAATAGCCGTTGGCCCTATTGTATGAGTATGACTCTGGCGAGGGCGTCGCGTTTCTTT
TAAAGCGTTTTTAAATGTTATATAGGAAAACGTTTTTAGATGTTTTAAAAAATCCTGAAA
AAAAATGACAGGATGGAAACTATAAGAGCTTCCTTCTTTGTAGACTTATGAAGGGATATG
AGACTCCTTTAGAGGCACTAAATAATGTCTATGTAGTATAAATTCAGTTTCATGGGACCT
TGTTGTAATCGTAACTTCGATTGAACAGCCTATTCTGAATTACTTAGTGAAATCAGCGGC
CGCTCGAGCATTATGAAAAGGGCCCAATTCGC

Homology of Contig U35_15786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71300.1	293	1e-172	protein\|S-formylglutathione hydrolase, putative, expressed
Brachypodium v1_2	Bradi2g60400.1	292	4e-178
Arabidopsis v10	AT2G41530.1	284	1e-139	\| Symbols: ATSFGH, SFGH \| S-formylglutathione hydrolase \| chr2:17323656-17325430 REVERSE LENGTH=284