barSeed - Barley Seed Development Database

Probe CUST_10350_PI390587928

Source Contig U35_15788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10350_PI390587928	Hv_44K_v2	CATTGTAGTGTTTTATTGTGAACCGAGCCACAACTAAGCCACAATTGTTATTGTTGATTA	1029	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360558	1095	2e-24	1034 - 1093	100	60 / 60	plus	ABC03970 ABC03971
JLOC1	JLOC1_26536.1	674	8e-25	419 - 478	100	60 / 60	plus
Harvest21	ABC03970	1104	3e-25	1030 - 1089	100	60 / 60	plus	ABC03970
Harvest35	U35_15788	1104	3e-25	1030 - 1089	100	60 / 60	plus

Contig Sequence (1104 bp)

>U35_15788 1104 Hv_44K_v2
GTAATCGCGGCGTCGGCGGCTGCGGCGGAACCCTCCCGGCGATCACCGGACTCACCCCGG
CAGGCAAAGCAATGAGGAGGTACAGCCCCCAGTACCGGAGCCCCCCAAGGAGGGGATATG
GTGGCAGAGGTAGAAGTCCCCCAAGGAGGGGATATGGAGGACGGAGGGAGCAGGGTTCAG
GAAGCCTCTTGGTCCGCAACATCCCATTAAGCTGCAGGCCGGAGGATCTTAGAGTTCCTT
TTGAAAGGTTTGGTCCTGTTCGGGATGTGTACCTGCCAAAGGATTATTACACCAGGGAAC
CCCGAGGGTTTGCATTTGTGGAGTTTGTTGACCCTTATGATGCATCTGATGCACAATATC
ACTTGAACCGCTCATTATTTTTTGGCCGAGAGATAACTGTTGTTGTTGCTGCCGAGTCAC
GGAAAAGGCCAGATGATATGCGTAATAGAGCTAGAGTCAGGGGGTATTCTGGTGAACCTG
AAAGGCGTAATTCTCGTTATGGGAGGTCCCGTTCCCGTTCACGCTCCTACTCTCCTCGCT
ATCGGGGCCGTCCTCGGTCAAGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGAGATG
ATTACTCTGCTTCCCCACCAAGATCACATCACACACAGTCTCCTAGGCGTCTGCCAAAGG
GACATGAAGAAGACGAGCGGAGATCCTATTCTCCTGCTGGTAGAGGTGGCGGCGAGCGTG
ATGCTGATACTAATGGAAAGAGAAGGTCGCCGCCATCTGACATTGACAGGTCGCCTCTAC
GCTCACGTAGGCACTCCTCGGGGTCACCTGTGGGGTCGCGCTCAAGGTCCCCTGAAGCTT
CTCCTGCCCGCAGCGACTGATAAGATTGGCGGTGTTACCCGTATTGCCCCGTCTCCCGTG
GCCATGTACTCTTATCTATAGCTTCATTGTCTGAGTAAAACCCATCTGGGATGTGTTGGC
TGGTGCTGCGGTGCCTCTTTAGTTAGCAGATGTGACTTGTTGGCTGCTTGGTGTTGCTGA
ACCTTGTACCATTGTAGTGTTTTATTGTGAACCGAGCCACAACTAAGCCACAATTGTTAT
TGTTGATTATGAAAAAAAAAAAAA

Homology of Contig U35_15788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g38430.1	264	4e-74	protein\|SR repressor protein, putative, expressed
Brachypodium v1_2	Bradi4g03940.1	296	2e-74
Arabidopsis v10	None