barSeed - Barley Seed Development Database

Probe CUST_10349_PI390587928

Source Contig U35_15789

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10349_PI390587928	Hv_44K_v2	TGTAGCGTACTCGTCGTTGTTTAACTTTTGTATACATGATATGCGAGCGTGCCTGCAGAG	1516	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.478	1.894	1.005	0.840	0.317	0.473
Raw	86.352	106.078	47.858	61.610	7.706	13.490

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC03971	1582	3e-25	1517 - 1576	100	60 / 60	plus	ABC03971
Harvest35	U35_15789	1582	3e-25	1517 - 1576	100	60 / 60	plus

Contig Sequence (1582 bp)

>U35_15789 1582 Hv_44K_v2
CGAGCTTTCTTCTATCTCTCTATCGCGCCTTCCCCACCAGCATCGACCTATCTCTGCCCT
CATTTCGGTTTCCCCATTCCCCTTCGCACCCCCGCGGCGGCGGACCTCCCCGGGCGCTCC
CCGGACCACGCGCAACAGTACCATGAGGAGGTACAGCCCCCCACACCGTAGTCCCCCGAG
GAGGGGTTATGGCGGTAGCCCTGCACATCGTAGTCCCCCAAGGAGGGGATATGGTGGCAG
CCCCCCGCACCGCAGCCCCCCAAGGAGGGGATATGGTGGCAGAGGAAGAAGTCCCCCTAG
GAGGGGTGGATATGGAGGACGAAAGGAGCAGGGTTCTGGAAGTCTCTTGGTCCGCAACAT
CCCACTAAGCGCCAGAGCGGAGGATCTCCGTGTTCCTTTTGAAAGGTTTGGTCCTGTTAG
GGATGTTTACCTTCCGAAGGATTATTACAGCGGGGAGCCACGAGGGTTTGCGTTTGTGGA
GTTTGTTGACCCTTATGACGCCTCTGAGGCCCAATATCACATGAATCGCCAGGTATTTTT
TGGCCGTGAGATAACTGTTGTGCTTGCTGCTGAGTCACGGAAGAGGCCAGAGGATATGCG
CACTAGAACTAGAGTCAGTGGTTATTCTAGAGGTCATGAAGGGCGCCGTTCCTCTCATTA
TGGGAGGTCTCGTTCCCGTTCACGCTCCGCCTCTCCCCGCCCTCGTGGCGGTGGTCGCGC
TCGGTCAAGGTCATACTCTCCTGCTCCAAGACGGCGGGATGACTACTCTGCTTCCCCACG
GGGAAGGGAGTCTCATCGCTCGAAATCTCCTGTGCGTCATCCGAAAGAACATGAAGAGGA
CAAAAGGAGATCCTACTCCCCCCCTGGTAGAGATGGTGGCCAGCGTGATGCTGATAATGG
TTATGAGAAGAGGTCGCCACTGGCTGACAGTGATGGATCCCCTTCACTGCAGAGGGTGGC
CAGGCCATCCTCAGGGTCGCCCCCTGGATCCCGCTCCAGGTCCCCCGACGCTTCTCCCGC
CCGCAGCGACTAAGAAAGTGGTTACATCCTCTGCAGTTGCCGCATCTCCATCTAGCTACT
TCCATTCCATTGGTTCGAGTAAAACCCTTTGAGGTTGTGTTGTATTGCTTGTTAGCGGTC
ACAGACGTTCTGCTCCTGCTTGTTGCTGTTGGAACCTTAAGGACTGTAGCATGGCGTGTC
TGTCATATCTATGTACCATGTGTATGGAGTGTCAGGGACCCAATTTCCATGTACTTTATT
TGGAGAAAAGCCTTTGAGTTGATCGAAAAAAAAAAAAAAAAAAGATTGGGCCAGTGGATG
GATGAACTGCTCTGCATGCAGCAGCTGCAACGCATTCTCCCTCCCTTTTAATCATGGAGG
CCATTGCTTGGGCTGCTGGTGCCATCAGTTGCCCTTTGAGCTTTTATCTGGGACCTGATA
AACAGAAAAAAACTTTGTGCTGGGCGAGTGAAGGGAAATAGTGCCATCAATCCGTCGAGC
AACCCATCATGAATGCTGTAGCGTACTCGTCGTTGTTTAACTTTTGTATACATGATATGC
GAGCGTGCCTGCAGAGGAGAAC

Homology of Contig U35_15789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g15310.1	266	1e-82	protein\|RNA recognition motif containing protein, expressed
Brachypodium v1_2	Bradi4g03940.1	296	7e-93
Arabidopsis v10	None