barSeed - Barley Seed Development Database

Probe CUST_10344_PI390587928

Source Contig U35_27765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10344_PI390587928	Hv_44K_v2	TGCCTGCATGCCTATGTTTGTTATGTTGAAAGAAACCACCTTGATGTTTAATTATCCTGT	503	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.819	2.218	1.987	1.246	0.388	0.441
Raw	665.484	2867.461	2129.847	2148.069	229.199	287.572

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360346	2414	2e-24	2314 - 2373	100	60 / 60	plus	ABC26412
MLOC	MLOC_81189.1	691	2e-24	592 - 651	100	60 / 60	plus	ABC26412
JLOC1	JLOC1_54020.1	722	8e-25	590 - 649	100	60 / 60	plus
Harvest21	ABC26412	592	3e-25	30 - 89	100	60 / 60	minus	ABC26412
Harvest35	U35_27765	592	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_27765 592 Hv_44K_v2
CGCCGCTGCCCTTGCGGGTGGTGGCAACAATGGTGGCCGGATGGTGGAGAGGACCGGGTC
GCTGGACACGGAGTCAACGGGTCGATCGGCGGGAAGCTGATGGGGTCACCGTTCTCGGAC
GAGGAGTCCCCCAAGCGGCGCAACAGCGGCGTGCTGCGGAGGATGAGCGGGCTGTGGAAG
AAGGGGCCCAAGTGAAGAAGCTCATGAGACCGGACGAGACGACCGACCGACGAGAGGTAA
GGTAAGAGTAGCAGCAAGATGACAACCAGATTCAGCAGAGCTGGTCAGTGATCACAGTAG
CAGTCTAGTAGAGTTGCTGATGATGAGTAGTAGAAATCTATAGCTGAGCTTCTAGGGTTA
CTCACTAGGATGATGGATGTGATGGAATGGAGTGGAATGATAGATGGATATCTGTCCCTT
CTTGTTTGGAGTTAGTTGAAAGAGAGAGAACCTGCTGTGGATTGTGGTGTCATCAGATCC
TGGAGCAGCCGCTTTTGTTTGGCTGCCTGCATGCCTATGTTTGTTATGTTGAAAGAAACC
ACCTTGATGTTTAATTATCCTGTACTTACCATCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None