barSeed - Barley Seed Development Database

Probe CUST_10340_PI390587928

Source Contig U35_28461

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10340_PI390587928	Hv_44K_v2	TATCTAATGGCATGGCTGGCTGTCGGATGTGATCTATTCTCGTGTCACATCGCTTTCTTT	592	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.620	1.503	1.270	0.777	0.536	0.368
Raw	686.702	495.374	461.920	398.821	109.016	81.538

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64872.1	225	2e-24	114 - 173	100	60 / 60	minus	None
Harvest21	ABC27338	658	3e-25	593 - 652	100	60 / 60	plus
Harvest35	U35_28461	658	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_28461 658 Hv_44K_v2
GCACAGGGTCAAAGAAGCCTGCTAGGTGCCATAGGATGTGCCGAAATGCCTACCTCTATG
GTTTGCGTATAACGTGAATAGCTCCTGTCTGTTGTTTAAAAAGAACAAAAGCACGAGGTA
GGGGAGGTTCAGCCGTCAGATATCAGATCTCCCATCAATGGCACGCAGGAACCTTCATCA
AGCTGCCCCACCAAAATCCTTCCAAAGATATTGACACTGCCTGATGCTCATGACCAACAA
TACTATGTAGGGATGACACTTGTTGAATGGTGATGCCTGGGCTGAATAAGCAGCTGCAAG
GATTTCTCCCAGAAAGTTGTTTTAATATTGACCCACTGAGAGAGAAGCATGTTCCTGAGC
ATCCATAACCTCGGAATTGATCTTCTCTTTCCCTTTCTTTTCTGCTCCCGTGCTTAGATC
GAACAATATTGCGAAATCAGTGATACGAAAAATCCTCTTCCATTCTTTCGGGCTGCAGGC
AACTTAGAGAAGAAAACAGGCTTACATCTCCAAGCCACACTAGGTAGGGCAAGGAATAGT
CCCTATCACAAGACCAAGCGGATCTCATCCTGCAGAAGACTCAGAGCGGATCTATCTAAT
GGCATGGCTGGCTGTCGGATGTGATCTATTCTCGTGTCACATCGCTTTCTTTCTTCTC

Homology of Contig U35_28461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None