barSeed - Barley Seed Development Database

Probe CUST_1033_PI390587928

Source Contig U35_40178

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1033_PI390587928	Hv_44K_v2	CTGACAGTACTCTCCCCATAAAATTGGCAATCCAAATGTTGCAGGCCTTGGTCGTTCAAA	16	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.507	1.365	0.944	0.894	0.446	0.696
Raw	361.044	500.726	310.832	467.971	81.579	135.951

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14192.4	2291	7e-23	1495 - 1551	100	57 / 57	plus	None
MLOC	MLOC_14192.5	2533	7e-23	1737 - 1793	100	57 / 57	plus	None
MLOC	MLOC_14192.6	2399	7e-23	1603 - 1659	100	57 / 57	plus	None
JLOC1	JLOC1_9680.1	1355	4e-23	248 - 304	100	57 / 57	minus
Harvest35	U35_40178	659	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (659 bp)

>U35_40178 659 Hv_44K_v2
TTTTTCCTTTTTTTTTTTTGAACGACCAAGGCCTGCAACATTTGGATTGCCAATTTTATG
GGGAGAGTACTGTCAGGGAGCGCAGAAGGCATACGCATACACCAGAAACTGAATTACCCT
GACCGCCTAAACGAATATACTGGAGTACAACCGTGCTTACTTGCTATCGTTCCACTCTCA
GAGGGAGAACTTTTACTATCCGTTTTGTTCTATGCATGTCAAAGTTCAGACCTCACCAGC
CATAATGAGCCATGGGCGATATCGCTCTCCAATTAACAGAGACACTCACACTACTGTACC
AGTAGCCTCGTCATCATGAGCCATACAGCCAGAGAGAAAAAACACTGTCAAATGTAATCA
CCCTGCACAATCTTCCTGGCGATGAACTTCCCCAGGAAATCAAAACCATGGCAATAGAGA
GCTTCGATCTCAGCACGCGTGCCCGTCTCGACCATCCGTGTCAACTCCGCTCTGTGCGTG
TCCTGAAGAAACTTAGATGACAGCAAGCTTTTGGCGACCTGCAAATCACGAGGTTTCAAC
TCTTGGAATGAACTCTGAGGGATAAGCTGCAGATCATCTCCTCTTAGGCCAAGCCATTTT
ACATTGCAAGCGTATCTGTATGATTCCAAGCCCATTGATATGCTTCCATATTTGTAAGT

Homology of Contig U35_40178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06050.1	386	8e-59	protein\|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed
Brachypodium v1_2	Bradi3g16580.1	383	2e-58
Arabidopsis v10	None