barSeed - Barley Seed Development Database

Probe CUST_10337_PI390587928

Source Contig U35_28462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10337_PI390587928	Hv_44K_v2	CTTGAAAATGGAGATTCTTCCAGTCGACGACTTGGACATTGCATTGCATGACTTCGTCAG	395	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.613	1.202	1.252	0.745	0.435	0.365
Raw	107.481	115.702	111.786	100.555	20.991	19.625

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80996.1	2653	7e-23	1688 - 1747	98	59 / 60	plus	ABC21414
MLOC	MLOC_80996.2	2709	7e-23	1613 - 1672	98	59 / 60	plus	ABC21414
MLOC	MLOC_80996.3	2805	7e-23	1670 - 1729	98	59 / 60	plus	ABC21414
MLOC	MLOC_80996.4	2717	7e-23	1729 - 1788	98	59 / 60	plus	ABC21414
JLOC1	JLOC1_53902.1	2748	4e-23	1591 - 1650	98	59 / 60	plus
Harvest21	ABC27340	465	3e-25	396 - 455	100	60 / 60	plus
Harvest35	U35_28462	465	3e-25	396 - 455	100	60 / 60	plus

Contig Sequence (465 bp)

>U35_28462 465 Hv_44K_v2
CCTTTGCAGACCGTTAGACCTTTTGAGTATGCTGAGGTTGTGTTGAAAGATGAAGCAGAT
GTCGACCCTAATGATCAGGCCTCTGTTCTTGAACATTTGGATAAAATTGTAAGAAATCTG
ATTGAAAAGAGTAGTCAACCAGCAGCCAGTAGATCTGAAGCCAAACTTCCATTAGTTCGA
ATCAAGGTAGATTACTCTGGGTTTTCAACAATAAACCCACAACGATTTGGTCAGAAGTAT
GTCGGCAAGGTTGCAAACCCCCAAGATATTCTCATTTTCTCAAAAGCAGCAAAGAAGCGT
CAGACTACTACAGGAGAGAATATCGACGAGTCCGAGAAACTTCGTCCTGAGGAACTAAAC
CAACAAACTATTGAAGCTTTGGTCGGAGAAAATAACTTGAAAATGGAGATTCTTCCAGTC
GACGACTTGGACATTGCATTGCATGACTTCGTCAGCAAGGATGAC

Homology of Contig U35_28462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54340.1	706	1e-88	protein\|double-strand break repair protein MRE11, putative, expressed
Brachypodium v1_2	Bradi5g23230.1	730	2e-91
Arabidopsis v10	AT5G54260.1	720	1e-77	\| Symbols: MRE11, ATMRE11 \| DNA repair and meiosis protein (Mre11) \| chr5:22032702-22037749 FORWARD LENGTH=720