- Probe CUST_10329_PI390587928
- Source Contig U35_30780
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10329_PI390587928 | Hv_44K_v2 | TCAGTTGCATGTTGGTATGCAACAGAAGTTACTCCTTCCGTACTCGAAATAGACTTCCGC | 313 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.248 | 3.719 | 1.833 | 0.754 | 0.861 | 0.857 |
| Raw | 27.080 | 44.167 | 19.974 | 12.303 | 2.690 | 4.521 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_28700.1 | 885 | 8e-25 | 826 - 885 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30828 | 397 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | ABC30828 |
| Harvest35 | U35_30780 | 397 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus |
Contig Sequence (397 bp)
>U35_30780 397 Hv_44K_v2 CTGAGGGGCAGCTGGGCGTCGGCGCTGCTTGCACCGTCGCGTTCCGCGTCATGTACGTGG TGGAGGCCATCGTGCTCGGCCTGGCGCTTTCCTGCTTCTTCTGCTGCTGCGGCTGCCAGA TATAGCTGGCCATGGCCTATTGGCCTGCATGCCCCTTGCTGTGATTCATGCAAGCTCCTT CCTGTCTGCTGCTTGCCATTGGGCGTGTAATCTTGTACCCCCGGTCCTTTGATTTTCTTC TGTCCTTTATTTTATCTCTTAAATTAAGATGCTTAGTTCTGTTGTTGATCATCGATGGTC GATCGAGTTGGACTCAGTTGCATGTTGGTATGCAACAGAAGTTACTCCTTCCGTACTCGA AATAGACTTCCGCCCCGCCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_30780 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |