barSeed - Barley Seed Development Database

Probe CUST_1031_PI390587928

Source Contig U35_40180

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1031_PI390587928	Hv_44K_v2	GGATGCTGTATATTGCTCATAGCTAAGTTGTGTACTAGTAGTTTGTATCCATTATCTTGC	34	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.058	1.437	1.542	1.274	0.370	0.383
Raw	89.551	194.216	184.117	233.238	24.501	27.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_40180	364	3e-25	35 - 94	100	60 / 60	minus

Contig Sequence (364 bp)

>U35_40180 364 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCCTTTTTTTTTTTGCTGCAAGATAATGGATACAAACTACTAG
TACACAACTTAGCTATGAGCAATATACAGCATCCCTTACTTTGTTCTCCTAACCAGTTCC
AACAATGTATCGATGGGGACATACATCAGGGTTTACACATTTGAAGCTCCTCCCATCTAG
CCCTCTATATCCAATTGCTTGAGCAAAGCAAAACAATGTTCATGGATTTGTTCTGCTCGG
ACTCAGTGTTTCTCAAGTATTTATGGGAGCATAAATAGCAAAAAAATTTTCCAGGCAATG
ACTGAACTATGGCAACGTGTTATCTTCAAATCTCGCATAAATGAATCATTGGGAGGGGGG
ACAA

Homology of Contig U35_40180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None