barSeed - Barley Seed Development Database

Probe CUST_10313_PI390587928

Source Contig U35_16497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10313_PI390587928	Hv_44K_v2	CAAACATTATATGTTTTGCTCATAACCCTCCTGTATCAATGTTTCTTGCTGCTGCAAAAA	750	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.651	1.483	1.118	0.757	0.248	0.260
Raw	382.695	524.420	356.854	370.158	43.480	50.428

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_16497	823	3e-25	751 - 810	100	60 / 60	plus

Contig Sequence (823 bp)

>U35_16497 823 Hv_44K_v2
GATGCATTCCACGTGACAGCTTGGATGAACATATTGTCATCCACATGGACGGTGTAAATA
TTTTGGCAGTTAATTATGGTTCAGTTGGTGGCTGCCAATATCCCAGGCCAATGAAAGTAC
CATCAAAATGGACATTCAATTCGTACACTATTCTGAAGACTGCTGACCAAGCACCAAGAA
CTCCATCATTTGTAGAACAATTAATAGAAACTGAGAGTGGACTTGGTGAAGTGATGAAAC
CACCTGAGAAATCTTTCTGGGCTAAATATTGGATGTACATCATTCCTCTTGGTCTCATTG
TCATGAACGCCGTCACGGCAGCAGCCAACATACCGGAGGAGCAAGCTGGAGGGCAGGGTC
GAGCTCCAGCACAAAGGGCGCCAATTGCTGCTCCAAGCAGAAGATGATGGCTTCTTACAT
TCTTTGCATGCCATAGGAAATGGCAACTCAGCACTTGTAATTTTTGCCCAACATCGTTTG
AGTTTCAGATTCACAAAGAATGGACAGCGGATGGATCTGCTTGACCTCTCCAGAACAGGG
GCAGTACTAGCGGCAACAAGACTCACTTGGGCTTTTTTTTTTCTCGCATTCCAAAAATTC
ACCTTGTTGTAGAATCACCTCAGAAAGGTTGTGTGATCCGATCGCATCTACACGCGTATT
TTTGCCTGTTGATAGAAATCACCATCAGTCTTTAACTTGGTACAAACTGCATGCTTTAAT
ATTCAGAACTAGCTTAATTTATACCAATATCAAACATTATATGTTTTGCTCATAACCCTC
CTGTATCAATGTTTCTTGCTGCTGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g16320.1	299	2e-67	protein\|expressed protein
Brachypodium v1_2	Bradi4g20700.2	300	8e-74
Arabidopsis v10	AT1G65270.2	292	8e-53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). \| chr1:24241855-24244504 FORWARD LENGTH=292