barSeed - Barley Seed Development Database

Probe CUST_10312_PI390587928

Source Contig U35_16498

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10312_PI390587928	Hv_44K_v2	ATTCTTTGCATGCCATAGATTCACAAAGAATGGACAGCGGATGGATCTGCTTGACCTCTC	1020	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.299	1.263	1.128	0.970	0.453	0.422
Raw	951.229	1434.490	1128.153	1472.718	254.970	252.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39962.1	867	2e-24	288 - 347	100	60 / 60	minus	ABC06800 ABC06801
JLOC1	JLOC1_26106.2	1027	8e-25	548 - 607	100	60 / 60	plus
Harvest21	ABC06800	1314	3e-25	954 - 1013	100	60 / 60	plus	ABC06800
Harvest35	U35_16498	1381	3e-25	1021 - 1080	100	60 / 60	plus

Contig Sequence (1381 bp)

>U35_16498 1381 Hv_44K_v2
TCGAGCACTGTTGGCCCCGCATACATCACCTCGGCCGGCGCTGCCGATCTCCCTCCTCCA
GTCCAGAGTCCAAGCCTGAGCCCCTTCACCCAAAGCCATGGCCGCGCGGCGTCGCTCTCT
CCTCATGCTCCTGCCCCTCCTCCTCCTCCTCTCCCACTTCCTCTCCCTCGCCGCCGCCTT
CGAGTCGGACGAGCTGCTCCTCCACGACGACGACGAGTTCGAGGGCACCAGGGCCTCCTC
CACCCCCTCCCCTCGGCCGCCCTCGACACCGCCGGTAGTGACCTCCTCCCGCCGCCGATC
CGCGGACACAACGCAGGCGGCTGGCGCCTCCGAGTCCAACACCGTCCAGTTCACCCTCGA
GCACGACCTCGGAGCCGGCCTAGGGTTCGCCCCCGCCGGGTCCTTCTCCGCCCGCCTCAA
GTCCTCGGCCCACGGCTCCCAGACTCTCACCAAGCTCCGATTTACGAGGAATGAGTTGTC
TGAGGATGAAAAGGATGCATTTAAGAAATTACTGGAAGAAGATAGTTTTTACACAATAAG
GCTGCCGTCTAATGTGTTGGATCCTACAAGACACGATTATATTTATTCTTCGATCAAAGC
GAGATGCATTCCACGTGACAGCTTGGATGAACATATTGTCATCCACATGGACGGTGTAAA
TATTTTGGCAGTTAATTATGGTTCAGTTGGTGGCTGCCAATATCCCAGGCCAATGAAAGT
ACCATCAAAATGGACATTCAATTCGTACACTATTCTGAAGACTGCTGACCAAGCACCAAG
AACTCCATCATTTGTAGAACAATTAATAGAAACTGAGAGTGGACTTGGTGAAGTGATGAA
ACCACCTGAGAAATCTTTCTGGGCTAAATATTGGATGTACATCATTCCTCTTGGTCTCAT
TGTCATGAACGCCGTCACGGCAGCAGCCAACATACCGGAGGAGCAAGCTGGAGGGCAGGG
TCGAGCTCCAGCACAAAGGGCGCCAATTGCTGCTCCAAGCAGAAGATGATGGCTTCTTAC
ATTCTTTGCATGCCATAGATTCACAAAGAATGGACAGCGGATGGATCTGCTTGACCTCTC
CAGAACAGGGGCAGTACTAGCGGCAACAAGACTCACTTGGGCTTTTTTTTTTCTCGCATT
CCAAAAATTCACCTTGTTGTAGAATCACCTCAGAAAGGTTGTGTGATCCGATCGCATCTA
CACGCGTATTTTTGCCTGTTGATAGAAATCACCATCAGTCTTTAACTTGGTACAAACTGC
ATGCTTTAATATTCAGAACTAGCTTAATTTATACCAATATCAAACATTATATGTTTTGCT
CAAAAAAAAAAAAAAAAAATGTTTTCTTGCTGCTTGCATCGTCGAAAAAAAAAAAAAAAA
A

Homology of Contig U35_16498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g16320.1	299	2e-121	protein\|expressed protein
Brachypodium v1_2	Bradi4g20700.2	300	6e-140
Arabidopsis v10	AT1G65270.2	292	4e-90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). \| chr1:24241855-24244504 FORWARD LENGTH=292