barSeed - Barley Seed Development Database

Probe CUST_10309_PI390587928

Source Contig U35_42762

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10309_PI390587928	Hv_44K_v2	ACAAACTCATTTCCTTTTCGTGCTCTTATTTGCTTTGCAGTGGGGCTATGTTGTGGTGAC	492	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31664.1	1128	2e-24	639 - 698	100	60 / 60	plus	ABC07874
JLOC1	JLOC1_20774.1	610	8e-25	100 - 159	100	60 / 60	plus
Harvest21	ABC38639	701	3e-25	493 - 552	100	60 / 60	plus
Harvest35	U35_42762	701	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_42762 701 Hv_44K_v2
GAAACACTCCGCTTTTGCCCTAAGCGGTAGATTAAGAGTTTTTTTTTTAAAATTGGCCAA
AATTTGGATGTTTTTCAACTACTGCTGCTTGTCTGCTTGTGCAATAATGGCAATATGCCA
TTTATCTTATTATTAGGCTTTGTTTGGAAACTATTTCCTTCATATTCTGGCCACGTGATC
TCTATTTGCTTATGTCTATTTGAACTGAACTCCATTTTAGTTGTTATTTTGCTTGCTATG
TGAACCTGATGTGTATTTGCTATTGTGTGAACTGAATTTTAGATGCCATTTCAATTACTC
ATGTGCCATGTTTCCTATTTTTGTGAGTATATTATTCAAAATCTGCCAAATTCTAGTCAA
TTTCAAAAAACGCTTAAGCGCGGTTAAGCTACGCTTAAGCGCCCATTGCTCTAAGCTGTG
GCCTTCCGCTTTCCGCTTTTTTGAACATTGCTATTCATTTATTTTATAGAGTTGGTGTGT
TATATCTAACAGACAAACTCATTTCCTTTTCGTGCTCTTATTTGCTTTGCAGTGGGGCTA
TGTTGTGGTGACCACCCCAAATGGTGTTTTAGATCACGAGGAAGCAATTAGGCAGAATGT
AGGGGGCCAGGTCCTTGGTTACTTCCATTGAGAAGGAAACAGAGTCATCACATGCTGAAT
CAGCCCTGGGTTGCGTTGNTATCTTTCTGTTATGACTGAAG

Homology of Contig U35_42762 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None