barSeed - Barley Seed Development Database

Probe CUST_10304_PI390587928

Source Contig U35_28472

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10304_PI390587928	Hv_44K_v2	CTGATCATGGGAAACTAGCATCCATCAAAGAATTTGAAGGCTATTTAGTTGCTTTCATAT	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371216	4530	2e-24	3200 - 3259	100	60 / 60	plus	ABC16982
MLOC	AK366273	4241	2e-24	2949 - 3008	100	60 / 60	plus	ABC16982
MLOC	MLOC_81631.1	1807	2e-24	1181 - 1240	100	60 / 60	plus	ABC16982
JLOC1	JLOC1_54294.1	1736	8e-25	743 - 802	100	60 / 60	plus
Harvest21	ABC27351	636	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_28472	636	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_28472 636 Hv_44K_v2
GGATTAGCTGACCCTACGTGCGGTGAAGGAATTGGTGGTCGAAATATAACTGATGCCGAG
TTAGAAAGATTACAACAAGCATTGAAGATTCTTTCTGATGCTGAAAAGCAGATAAGACTT
TCCAGTGAGCGTTCAACATGGTTCACTGCAGCTCTGCTCCAGCTTGGTTCTGGGCATGAT
TCAGAAATAACCCATTCAAGAAGCAGCAGTAAACAAAGTGCTAAAGCAACCAGCGAGACC
ATGTTGGAAGCAGTAAGAGAATCCTCTGCAAGCAGGAGTGTCTCTCATCCTCTATTTACT
ATTCGCGGTTCAAGGAAAACATTGGACCACAGAACAGCCAGTGGGCGCTCCAGTCCTAAC
GACCTTGCGTCATTATCTTCCCGGATGAGGCCCAGTGACAACTTAATTTATGGAGATTGT
AGATCTGTTGATAGAGTTCTACTGGATTCGGCTCAAGCAAGTAATTCTACTGAGCAAAAG
CCTATAATTAATGGAAGCTCAGACCTTATCCAAATTTGGCGAAAATGCATAGATAATTGT
CACTCAAAGACGTTGCAGCAGCTACTCTCTGATCATGGGAAACTAGCATCCATCAAAGAA
TTTGAAGGCTATTTAGTTGCTTTCATATCATTTGAG

Homology of Contig U35_28472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g13990.1	1125	7e-70	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi4g21057.1	1181	4e-94
Arabidopsis v10	None