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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_10301_PI390587928Hv_44K_v2AAGGAAGAGCTCTGAAGCTGAACAAGGATCGTCGTTTGGCACATATGAATAACTCCTACG639GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.0371.6151.0660.7770.2750.300
Raw 3903.9634835.4372801.3703280.023402.959475.319



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_27342.29113e-21121 - 1809758 / 60minus ABC10309
JLOC1JLOC1_18476.110172e-21270 - 3299758 / 60minus
JLOC1JLOC1_18475.18772e-21701 - 7609758 / 60plus
Harvest21ABC333525543e-25110 - 16910060 / 60plus
Harvest21ABC273547103e-25640 - 69910060 / 60plus
Harvest21ABC103097933e-25228 - 28710060 / 60minusABC10309
Harvest35U35_284737103e-25640 - 69910060 / 60plus
Harvest35U35_42377513e-25110 - 16910060 / 60plus



Contig Sequence (710 bp)

>U35_28473 710 Hv_44K_v2
GGCCAAGTTCAAGATAAACATGCAGATGAAAACCACATTTGGAGGATGATCAGGTACTTC
TAAATCAGGGTATTGGCATGCATGATTTAGATAAGAACTACCAGAACAGCGAGCAGATGC
TTGTAAATCAGAGAGCCAACGAGCATGGACATGGTGATCAACAACCTGAGAGCGAGCAAA
TGCTTTTAAACAATGAGGAAGCAATGCTAAAGCAAGATGCCGAGGAGCAGGTGGAGAATG
AGCAGTTGCTACCTCATCCTGCTACAGACGTTAATCACCGGATTAAGGAGGAGCAAATGC
TTCTAGATGATGTTACAGTTGTGCATGACTTGGATCATTGTGATCTGAATAGATTTGACG
GTGTTTGTTGTTTTTGTTGATATAGGCCAAGGCAAATGACTACCGTTCTAGGATCTGGCT
GCTTCTTCCTTTCAGTGGTTCCTGAATTGTTGCATTTCACATGTCTTGGCTAATTTTCCC
TTGATCATGAGTTGAACTTCTTCAAGCGTTTCCTTGGGAGAGGCTTCCTGAAGCATGTGC
AGGACAATGGACTTCTTCAAGATATCTTCAACATCAAGGCTGGCAAGGCTGAAACGCTGT
CATCGAATGACAAGAAAATCTTTAGATCTGGAGAAGAGAAAGGAAGAGCTCTGAAGCTGA
ACAAGGATCGTCGTTTGGCACATATGAATAACTCCTACGCTGGGAGAGGA



Homology of Contig U35_28473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None