barSeed - Barley Seed Development Database

Probe CUST_102_PI415269222

Source Contig TA33373_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_102_PI415269222	Hv_44K_v2	TCCGCTTCAGCTGCCTTATGTTCTGCCAGTTAATTGGATGTAGTTTGATCTCTGCTGTCA	1879	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50055.1	2354	2e-24	1118 - 1177	100	60 / 60	minus	ABC03951
Harvest21	ABC03951	1942	2e-22	1871 - 1925	100	55 / 55	plus	ABC03951
Harvest35	U35_15825	1942	2e-22	1871 - 1925	100	55 / 55	plus

Contig Sequence (1939 bp)

>TA33373_4513 1939 Hv_44K_v2
CGGCACGAGGCTCCTCGCAAGGGCGAAGGAAAAAGGGAAGGCGCTCGCCCCGTCCGTCTC
TCCTATATTTCCCGGGGGGATCCATCTCCGCGCGGCTTGGGCGGCGTCTTCTGAGGCGCA
GGCTTTCCCCCCCGTCCGCTCCGCTCCGCCCCGGCGGCCGATTCGCCGCCCCCTCGCCTC
GACGTCCAGGTCAGGGACGCTTCTCTCCTAGGAGAGGATCAATGTCTAATTATCACGACG
ATCATGTCGAAGACATGGAGGATGATTATGATATGGACGACCCCGCTGAGGACATGATCG
ACGCCCACCATGAGCGAGGTTTAAGGGACTCCGATTCGGAGGATGAAGAGTATGCCCACT
CGAATGATAAAATCCCAGATACTTCGGCAGCGGATGCAAGAAAAGGAAAAGACATCCAAG
GAATACCGTGGGAGAGGCTAGCTATCACACGGGAAAACTACAGAAAGACCAGATTAGAGC
AGTACAAAAACTATGAGAATATTCCTAATTCTGGAGAAGCAGCAGCCAAGGAATGCAAAC
CGACTGAGAAAGGTGGAACATATTATGAATTCAGACAAAATACTAGATCAGTAAAATCAA
CCATCCTACATTTTCAGCTGAGAAATTTAGTATGGGCTACATCCAAGCATGACGTCTACC
TAATGTCACATTACTCAGTACTTCACTGGTCAGCGTTGAGTGGTGTGGATACTGAACTTA
TGAATGTCCAAGGTCATGTGGCACCGAGGGAGAAGCACCCTGGAAGTCTATTAGAGGGTT
TTTCTCAGACTCAAGTTAGTACCTTGGCAGTCAAGGACAATTTACTGGTAGCTGGCGGAT
TTCAAGGGGAGCTAATCTGCAAGCATCTTGACCGAGAAGGAATAAGCTTTTGCTGTCGAA
CAACATATGATGATAATGCCATTACTAATGCAGTTGAGATATTCAATACTTCTAGCGGTG
CTGTTCATTTCATGGCATCGAATAATGACTCTGGTGTAAGAGACTATGACATGGAGAGAT
TCCAGTTATGCAAGCACTTTCAGTTTGATTGGCCAGTGAATCATACATCACTGAGCCCTG
ATGGAAAGCTTGTTGTTATTGTGGGGGATGATCCTAATGGTTTACTTATTGATGCCAATT
CAGGAAAGACTCTTCATTCCATGAAAGGTCATCATGACTTCTCATTCGCATCAGCCTGGA
GCCCTGATGGCCGAACATTTGCTACTGGGAACCAAGACAAGACATGCCGAATCTGGGACG
CGAGGAACCTATCGAAAGCAGTCCATGTATTGAAAGGTAACCTTGGAGCCATTAGATCGA
TCCGCTTCACGTCGGACGGGCAGTTCCTGTCGATGGCGGAACCAGCGGACTTTGTGCACA
TCTTCGATGTGAAGAGCGACTACAAGAGAAGGCAAGAGCTGGACTTCTTTGGTGAGATAT
CTGGGATGTCCTTCAGCCCGGACACAGACGCCCTTTTCGTGGGCGTGTGGGATAGAACGT
ATGGTAGCCTCCTCCAGTTTGGGCGCCTGTATAACAATTGGTATCATGACTCGCTGCTTT
GAGGCGAAAGCGGAGCGGATGTTGGACCTGCTTGTCCTCCCCCTCAGCTGCACCGAATGG
TTGGTGTGGCATAAGTTAGGCGTCTCCCCAAAACCGGAACTTCTCGAGTTGACCTGCATA
ATTCAAATTAATAAATGTTGTATCGTTGTATGTGTATATAAACAAATGTACAGATGCATA
TAGCCTATGTCTGGGGTAGAGTGCATCTCATCATATATGTTTAGACTCCAGTTAGTTGTA
AGGCCCTTGACTCAAGTCAAGTCGAGTGACGCTGTGAACATTGTCGTCGATGATGGTGTG
ACCTGTGACCTAAACGACATCCGCTTCAGCTGCCTTATGTTCTGCCAGTTAATTGGATGT
AGTTTGATCTCTGCTGTCA

Homology of Contig TA33373_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g48964.1	447	protein\|WD-40 repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g56640.1	447
Arabidopsis v10	AT3G13340.1	447	Transducin/WD40 repeat-like superfamily protein \| chr3:4332370-4334603 FORWARD LENGTH=447