barSeed - Barley Seed Development Database

Probe CUST_10295_PI390587928

Source Contig U35_28478

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10295_PI390587928	Hv_44K_v2	TTTTTGGGATCAACTTTTGATGTTTGGACAACTGACAAGCATTCAGGCCTTCAAACTCAA	602	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37286.3	1437	2e-24	236 - 295	100	60 / 60	plus	ABC17774
MLOC	MLOC_37286.1	1497	2e-24	296 - 355	100	60 / 60	plus	ABC17774
MLOC	MLOC_37286.2	1494	2e-24	296 - 355	100	60 / 60	plus	ABC17774
JLOC1	JLOC1_24132.4	1557	8e-25	216 - 275	100	60 / 60	plus
JLOC1	JLOC1_24132.3	1554	8e-25	216 - 275	100	60 / 60	plus
JLOC1	JLOC1_24132.2	1637	8e-25	296 - 355	100	60 / 60	plus
JLOC1	JLOC1_24132.1	1676	8e-25	338 - 397	100	60 / 60	plus
Harvest21	ABC27360	665	3e-25	603 - 662	100	60 / 60	plus
Harvest35	U35_28478	665	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_28478 665 Hv_44K_v2
GGCAAACCATGAGAAAATTAGAGAGGCATTTCTCTTCTTGGGCTTCTGATTGAAGGCATT
CTAACTGATTTCGGTGGCGAAATGCCCTGCCAGTTTTTGGAAATTCTAAAGGTGCTGCTG
GATGGATGTACTGCAGATACAGTTACACAATGTAGAGACTTCATCGAGTTATTCTATGAG
AAGTGTTTTGATAAGTTGATCGATATAATAGAATCGTCAAGAGTTGAAGAATACTCTGCT
AAGCCTGAAATATTGTATAACATTTGTGAGCTCTTATGCTTTTGTGCACGTCATCACCCC
TACAAGATCAAGATTGCCTTTTTTGGAAGCAATTCAATGGAGAAGATCCTTACTCTAACC
CGTCGAAGAGAGAGGTCTTTGGTTGTGGCAGCTGTCCGAATCATGCGTACTATTATTGGC
GCTGGCAGAAATGACGAGCTTCTAATTAGCCATGTCATTGAATACAACACGTTGAAACCA
ATTATTGAAGTATTTGTTGAAAATGGAAATAGATACAACATGCTACACTCCACGGTCCTC
GAACTGTTGGACTTCATAAGAAAGGAAAATCTAAAATCCCTCGTCGTATATGTTGTCGAG
TCTTTTTGGGATCAACTTTTGATGTTTGGACAACTGACAAGCATTCAGGCCTTCAAACTC
AAGTA

Homology of Contig U35_28478 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g23590.1	895	2e-67	protein\|suppressor of Mek, putative, expressed
Brachypodium v1_2	Bradi2g12530.1	891	6e-69
Arabidopsis v10	AT3G06670.2	886	9e-55	binding \| chr3:2105908-2113136 REVERSE LENGTH=886