- Probe CUST_10288_PI390587928
- Source Contig U35_30795
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10288_PI390587928 | Hv_44K_v2 | GATGCTTTTATTGCCTTACCAGGCGGCTACCGAACCCTTGGAGGAGTTGCTTGAAGTGAT | 423 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.257 | 0.253 | 0.318 | 2.470 | 3.281 | 5.234 |
| Raw | 2.732 | 5.505 | 8.333 | 108.790 | 51.337 | 87.154 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_41794.1 | 1131 | 6e-21 | 332 - 390 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC30851 | 483 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19060 | 638 | 2e-21 | 508 - 566 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_30795 | 483 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9790 | 638 | 2e-21 | 508 - 566 | 97 | 58 / 60 | plus |
Contig Sequence (483 bp)
>U35_30795 483 Hv_44K_v2 CTCCCCCGGCTCGCCGCCGTCTTGCTCTCGGCTCGACCCTGTCCGTCGCGGTGTTCGGGT TCTTGCGGGGAAGATGGAGAAAGGGGCCTCCTTTTCCCGCCGATCCCTCCCGGATTTGGT TGGTCGATTTTGGTTGGGGCCGATCCATCCATGTGGAGGCGCACGATCCTCCGCGTTGGT GGTCATGGGATTGGGGTGGTGGTGCTCGCGTGCTAGGTGGAGAGGGGCATAGACCTGGTC TACGGGGGCGGCTCCATCGGCCTCATGGGCCTCGTCTCCAATGCCGTCCACGCCGGCGGC CGACATGTCATCGGGATCATCCCAAGATCACTCATGCCCAGAGAGGTAACTGGGGATCCT GTTGGTGAAGTTCGAGCTGTTTCTGGCATGCACGAGAGGAAGGCCGAAATGGCCCGGTTT GCTGATGCTTTTATTGCCTTACCAGGCGGCTACCGAACCCTTGGAGGAGTTGCTTGAAGT GAT
Homology of Contig U35_30795 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |